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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:42.0 nTPM
HPA:42.0 nTPM
GTEx:31.1 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:36.4 nTPM
Allen mouse:4.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013582Antibody HPA014133
Glial cells LowMedium
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.0
Sample id Sample description nTPM
Hippocampus
nTPM: 40.7
1855 Male, age 76, left hemisphere 44.1
1898 Male, age 80, left hemisphere 42.2
2621 Female, age 67, right hemisphere 40.7
2148 Female, age 91, left hemisphere 40.2
1911 Female, age 85, right hemisphere 38.7
2529 Female, age 94, left hemisphere 38.1
Dentate gyrus
nTPM: 40.4
2010 Male, age 76, both hemispheres 43.1
1927 Female, age 91, both hemispheres 42.4
2530 Female, age 94, left hemisphere 41.3
2528 Male, age 74, both hemispheres 40.0
2246 Female, age 85, both hemispheres 38.1
2531 Female, age 67, both hemispheres 37.8
Entorhinal gyrus
nTPM: 38.9
2764 Male, age 80, right hemisphere 40.7
1787 Male, age 76, left hemisphere 40.0
2117 Female, age 91, right hemisphere 38.8
2613 Female, age 94, left hemisphere 38.5
1938 Female, age 85, left hemisphere 38.3
2686 Male, age 75, right hemisphere 37.2
Hippocampus, CA1
nTPM: 42.0
2749 Male, age 80, left hemisphere 50.3
2045 Male, age 76, both hemispheres 43.3
1873 Female, age 85, both hemispheres 40.2
2527 Male, age 74, both hemispheres 38.8
2082 Female, age 91, right hemisphere 37.1
Hippocampus, CA2
nTPM: 40.3
1963 Male, age 80, left hemisphere 45.0
1892 Male, age 76, both hemispheres 41.7
2437 Female, age 94, left hemisphere 39.8
2113 Female, age 91, right hemisphere 38.6
2249 Male, age 74, both hemispheres 38.6
1940 Female, age 85, left hemisphere 38.4
Hippocampus, CA3
nTPM: 40.4
2137 Male, age 80, left hemisphere 44.8
1867 Male, age 76, both hemispheres 42.7
2861 Female, age 67, both hemispheres 39.8
2620 Female, age 94, left hemisphere 38.9
2436 Male, age 74, both hemispheres 38.1
1891 Female, age 85, both hemispheres 37.9
Parahippocampal cortex
nTPM: 38.2
1933 Female, age 85, both hemispheres 39.4
1850 Male, age 80, both hemispheres 39.1
2693 Female, age 94, both hemispheres 38.8
2018 Male, age 76, both hemispheres 38.7
2245 Female, age 91, both hemispheres 38.2
2250 Female, age 67, right hemisphere 38.0
2532 Female, age 72, left hemisphere 37.9
2692 Male, age 74, both hemispheres 37.6
1990 Female, age 91, right hemisphere 37.5
2622 Female, age 67, right hemisphere 36.8
Perirhinal gyrus
nTPM: 39.3
1847 Female, age 91, left hemisphere 40.4
1794 Male, age 80, right hemisphere 40.3
2521 Female, age 94, right hemisphere 40.3
1841 Female, age 85, right hemisphere 38.0
2848 Male, age 76, right hemisphere 37.6
Subiculum
nTPM: 39.2
1901 Male, age 80, both hemispheres 40.9
2042 Male, age 76, both hemispheres 40.3
2729 Female, age 91, right hemisphere 39.2
2619 Male, age 74, both hemispheres 38.6
1977 Female, age 85, both hemispheres 38.5
2438 Female, age 94, left hemisphere 37.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.1
Samples: 197

Max nTPM: 58.0
Min nTPM: 16.4
Std nTPM: 7.0
Median nTPM: 30.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 58.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 52.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 48.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 47.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 46.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 45.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 45.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 44.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 44.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 43.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 42.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.9
FF:10169-103B7 60 years, female 44.9
FF:10153-102I9 76 years, female 20.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 6.9
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.7
Sample A Female 7.7
Sample B Female 7.2
Sample C Male 7.1
Sample D Male 5.7
Entorhinal cortex
nTPM: 7.0
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.2
Sample A Female 7.3
Sample B Female 7.6
Sample C Male 7.0
Sample D Male 6.2
Subiculum
nTPM: 7.5
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.5
Sample A Female 8.8
Sample B Female 6.9
Sample C Male 7.7
Sample D Male 6.5
Ventral hippocampus
nTPM: 7.0
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.5
Sample A Female 5.9
Sample B Female 5.5
Sample C Male 9.0
Sample D Male 7.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 36.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.6
Samples: 4

Max nTPM: 37.3
Min nTPM: 31.1
Sample A Male 31.1
Sample B Male 34.5
Sample C Female 35.5
Sample D Female 37.3
Hippocampal formation
nTPM: 36.4
Samples: 4

Max nTPM: 37.9
Min nTPM: 33.7
Sample A Male 36.3
Sample B Male 33.7
Sample C Female 37.9
Sample D Female 37.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.6
73584783 Antisense, RP_051206_01_B07, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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