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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:19.6 nTPM
HPA:19.6 nTPM
GTEx:16.5 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:20.7 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021012Antibody CAB013462
Glial cells MediumNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Hippocampus
nTPM: 16.8
2621 Female, age 67, right hemisphere 17.8
1898 Male, age 80, left hemisphere 17.3
2148 Female, age 91, left hemisphere 16.8
2529 Female, age 94, left hemisphere 16.8
1911 Female, age 85, right hemisphere 16.5
1855 Male, age 76, left hemisphere 15.8
Dentate gyrus
nTPM: 16.8
2528 Male, age 74, both hemispheres 19.1
2246 Female, age 85, both hemispheres 18.4
1927 Female, age 91, both hemispheres 17.5
2010 Male, age 76, both hemispheres 17.2
2530 Female, age 94, left hemisphere 15.1
2531 Female, age 67, both hemispheres 13.6
Entorhinal gyrus
nTPM: 17.5
1938 Female, age 85, left hemisphere 19.7
1787 Male, age 76, left hemisphere 18.7
2764 Male, age 80, right hemisphere 17.4
2613 Female, age 94, left hemisphere 17.3
2117 Female, age 91, right hemisphere 17.1
2686 Male, age 75, right hemisphere 14.9
Hippocampus, CA1
nTPM: 18.2
2749 Male, age 80, left hemisphere 21.9
2527 Male, age 74, both hemispheres 19.1
1873 Female, age 85, both hemispheres 18.4
2082 Female, age 91, right hemisphere 18.0
2045 Male, age 76, both hemispheres 13.7
Hippocampus, CA2
nTPM: 19.0
2249 Male, age 74, both hemispheres 23.6
1892 Male, age 76, both hemispheres 20.0
2113 Female, age 91, right hemisphere 18.6
1940 Female, age 85, left hemisphere 18.3
1963 Male, age 80, left hemisphere 17.0
2437 Female, age 94, left hemisphere 16.5
Hippocampus, CA3
nTPM: 16.9
1891 Female, age 85, both hemispheres 19.9
2436 Male, age 74, both hemispheres 19.7
2137 Male, age 80, left hemisphere 18.7
1867 Male, age 76, both hemispheres 18.3
2620 Female, age 94, left hemisphere 13.9
2861 Female, age 67, both hemispheres 10.7
Parahippocampal cortex
nTPM: 18.1
2532 Female, age 72, left hemisphere 20.1
1850 Male, age 80, both hemispheres 19.8
1990 Female, age 91, right hemisphere 19.5
2250 Female, age 67, right hemisphere 18.3
2692 Male, age 74, both hemispheres 18.3
1933 Female, age 85, both hemispheres 17.6
2018 Male, age 76, both hemispheres 17.1
2245 Female, age 91, both hemispheres 16.9
2693 Female, age 94, both hemispheres 16.9
2622 Female, age 67, right hemisphere 16.3
Perirhinal gyrus
nTPM: 19.6
1847 Female, age 91, left hemisphere 20.8
2521 Female, age 94, right hemisphere 20.4
1794 Male, age 80, right hemisphere 20.3
1841 Female, age 85, right hemisphere 19.2
2848 Male, age 76, right hemisphere 17.2
Subiculum
nTPM: 19.3
2619 Male, age 74, both hemispheres 20.9
1901 Male, age 80, both hemispheres 20.3
2438 Female, age 94, left hemisphere 20.1
1977 Female, age 85, both hemispheres 19.2
2729 Female, age 91, right hemisphere 17.7
2042 Male, age 76, both hemispheres 17.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.5
Samples: 197

Max nTPM: 32.2
Min nTPM: 4.0
Std nTPM: 4.7
Median nTPM: 16.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 32.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 30.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 29.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 26.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 25.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 25.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 25.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 25.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 25.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 25.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 25.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.3
FF:10153-102I9 76 years, female 64.6
FF:10169-103B7 60 years, female 46.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.8
Samples: 4

Max nTPM: 10.2
Min nTPM: 6.5
Sample A Female 7.9
Sample B Female 6.7
Sample C Male 10.2
Sample D Male 6.5
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.7
Sample A Female 8.3
Sample B Female 9.3
Sample C Male 8.3
Sample D Male 6.7
Subiculum
nTPM: 8.5
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.0
Sample A Female 10.3
Sample B Female 9.0
Sample C Male 7.6
Sample D Male 7.0
Ventral hippocampus
nTPM: 6.7
Samples: 4

Max nTPM: 6.9
Min nTPM: 6.4
Sample A Female 6.9
Sample B Female 6.7
Sample C Male 6.8
Sample D Male 6.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 20.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.7
Samples: 4

Max nTPM: 23.3
Min nTPM: 19.3
Sample A Male 20.2
Sample B Male 20.0
Sample C Female 19.3
Sample D Female 23.3
Hippocampal formation
nTPM: 20.1
Samples: 4

Max nTPM: 20.7
Min nTPM: 19.4
Sample A Male 20.7
Sample B Male 19.8
Sample C Female 19.4
Sample D Female 20.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
72077466 Antisense, RP_051017_03_A11, Mouse strain C57BL/6J (56 days, male) 0.3
68845837 Antisense, RP_050224_02_F06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.