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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:53.8 nTPM
HPA:53.8 nTPM
GTEx:64.7 nTPM
FANTOM5:110.2 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:118.4 nTPM
Allen mouse:7.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017287Antibody CAB004643
Glial cells HighHigh
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.8
Sample id Sample description nTPM
Hippocampus
nTPM: 52.7
1898 Male, age 80, left hemisphere 55.9
2621 Female, age 67, right hemisphere 53.0
2529 Female, age 94, left hemisphere 52.4
1855 Male, age 76, left hemisphere 52.2
1911 Female, age 85, right hemisphere 52.0
2148 Female, age 91, left hemisphere 50.8
Dentate gyrus
nTPM: 51.5
2246 Female, age 85, both hemispheres 54.0
1927 Female, age 91, both hemispheres 52.8
2010 Male, age 76, both hemispheres 51.6
2528 Male, age 74, both hemispheres 51.5
2530 Female, age 94, left hemisphere 49.8
2531 Female, age 67, both hemispheres 49.4
Entorhinal gyrus
nTPM: 51.2
1938 Female, age 85, left hemisphere 55.4
2613 Female, age 94, left hemisphere 51.8
1787 Male, age 76, left hemisphere 50.8
2686 Male, age 75, right hemisphere 50.3
2764 Male, age 80, right hemisphere 49.8
2117 Female, age 91, right hemisphere 48.9
Hippocampus, CA1
nTPM: 53.5
2749 Male, age 80, left hemisphere 58.5
2527 Male, age 74, both hemispheres 55.3
1873 Female, age 85, both hemispheres 53.9
2045 Male, age 76, both hemispheres 50.9
2082 Female, age 91, right hemisphere 48.9
Hippocampus, CA2
nTPM: 52.4
1892 Male, age 76, both hemispheres 56.9
2249 Male, age 74, both hemispheres 56.0
1963 Male, age 80, left hemisphere 51.5
1940 Female, age 85, left hemisphere 51.4
2113 Female, age 91, right hemisphere 49.4
2437 Female, age 94, left hemisphere 49.3
Hippocampus, CA3
nTPM: 52.5
2436 Male, age 74, both hemispheres 56.6
2137 Male, age 80, left hemisphere 55.4
1867 Male, age 76, both hemispheres 52.9
1891 Female, age 85, both hemispheres 50.9
2620 Female, age 94, left hemisphere 50.4
2861 Female, age 67, both hemispheres 48.8
Parahippocampal cortex
nTPM: 53.4
2245 Female, age 91, both hemispheres 55.4
1850 Male, age 80, both hemispheres 55.3
1933 Female, age 85, both hemispheres 54.1
2532 Female, age 72, left hemisphere 53.8
2250 Female, age 67, right hemisphere 53.7
2692 Male, age 74, both hemispheres 53.2
2693 Female, age 94, both hemispheres 53.1
1990 Female, age 91, right hemisphere 52.6
2018 Male, age 76, both hemispheres 51.5
2622 Female, age 67, right hemisphere 51.0
Perirhinal gyrus
nTPM: 53.8
1841 Female, age 85, right hemisphere 56.2
1847 Female, age 91, left hemisphere 54.1
2521 Female, age 94, right hemisphere 53.5
2848 Male, age 76, right hemisphere 52.8
1794 Male, age 80, right hemisphere 52.3
Subiculum
nTPM: 50.5
1901 Male, age 80, both hemispheres 53.3
2619 Male, age 74, both hemispheres 51.2
1977 Female, age 85, both hemispheres 51.0
2438 Female, age 94, left hemisphere 50.0
2042 Male, age 76, both hemispheres 49.5
2729 Female, age 91, right hemisphere 47.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 64.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 64.7
Samples: 197

Max nTPM: 107.4
Min nTPM: 43.7
Std nTPM: 10.7
Median nTPM: 63.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 107.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 94.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 94.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 94.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 91.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 90.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 88.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 88.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 86.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 85.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 83.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 110.2
FF:10169-103B7 60 years, female 124.5
FF:10153-102I9 76 years, female 95.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 24.4
Samples: 4

Max nTPM: 27.3
Min nTPM: 22.9
Sample A Female 24.3
Sample B Female 22.9
Sample C Male 27.3
Sample D Male 23.1
Entorhinal cortex
nTPM: 23.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 22.3
Sample A Female 23.5
Sample B Female 23.0
Sample C Male 22.3
Sample D Male 23.4
Subiculum
nTPM: 24.6
Samples: 4

Max nTPM: 28.2
Min nTPM: 22.2
Sample A Female 28.2
Sample B Female 22.2
Sample C Male 23.2
Sample D Male 24.9
Ventral hippocampus
nTPM: 22.2
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.1
Sample A Female 23.6
Sample B Female 23.1
Sample C Male 19.1
Sample D Male 23.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 118.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 112.8
Samples: 4

Max nTPM: 122.2
Min nTPM: 105.3
Sample A Male 108.1
Sample B Male 122.2
Sample C Female 115.6
Sample D Female 105.3
Hippocampal formation
nTPM: 118.5
Samples: 4

Max nTPM: 135.9
Min nTPM: 104.8
Sample A Male 135.9
Sample B Male 119.9
Sample C Female 104.8
Sample D Female 113.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.4
70429459 Antisense, RP_050614_01_F12, Mouse strain C57BL/6J (56 days, male) 9.4
75081397 Antisense, RP_060315_03_C08, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.