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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:44.5 nTPM
HPA:44.5 nTPM
GTEx:51.2 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:96.4 nTPM
Allen mouse:16.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035790
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.5
Sample id Sample description nTPM
Hippocampus
nTPM: 36.1
1898 Male, age 80, left hemisphere 43.7
1855 Male, age 76, left hemisphere 39.1
2621 Female, age 67, right hemisphere 37.0
1911 Female, age 85, right hemisphere 32.6
2529 Female, age 94, left hemisphere 32.6
2148 Female, age 91, left hemisphere 31.4
Dentate gyrus
nTPM: 37.2
1927 Female, age 91, both hemispheres 43.4
2010 Male, age 76, both hemispheres 41.0
2246 Female, age 85, both hemispheres 38.2
2528 Male, age 74, both hemispheres 34.8
2530 Female, age 94, left hemisphere 34.7
2531 Female, age 67, both hemispheres 31.3
Entorhinal gyrus
nTPM: 35.7
1938 Female, age 85, left hemisphere 42.1
1787 Male, age 76, left hemisphere 37.6
2764 Male, age 80, right hemisphere 37.4
2613 Female, age 94, left hemisphere 35.6
2686 Male, age 75, right hemisphere 30.9
2117 Female, age 91, right hemisphere 30.8
Hippocampus, CA1
nTPM: 39.5
2749 Male, age 80, left hemisphere 48.0
1873 Female, age 85, both hemispheres 42.6
2045 Male, age 76, both hemispheres 40.0
2527 Male, age 74, both hemispheres 35.6
2082 Female, age 91, right hemisphere 31.4
Hippocampus, CA2
nTPM: 37.8
1892 Male, age 76, both hemispheres 47.8
1963 Male, age 80, left hemisphere 40.0
2249 Male, age 74, both hemispheres 36.9
2437 Female, age 94, left hemisphere 35.1
1940 Female, age 85, left hemisphere 34.6
2113 Female, age 91, right hemisphere 32.4
Hippocampus, CA3
nTPM: 36.4
2137 Male, age 80, left hemisphere 42.7
1867 Male, age 76, both hemispheres 39.9
2436 Male, age 74, both hemispheres 37.0
1891 Female, age 85, both hemispheres 35.5
2620 Female, age 94, left hemisphere 34.3
2861 Female, age 67, both hemispheres 28.8
Parahippocampal cortex
nTPM: 37.7
1850 Male, age 80, both hemispheres 46.7
1933 Female, age 85, both hemispheres 40.9
1990 Female, age 91, right hemisphere 40.4
2693 Female, age 94, both hemispheres 39.0
2250 Female, age 67, right hemisphere 37.9
2018 Male, age 76, both hemispheres 36.6
2692 Male, age 74, both hemispheres 35.7
2245 Female, age 91, both hemispheres 35.0
2532 Female, age 72, left hemisphere 34.9
2622 Female, age 67, right hemisphere 30.2
Perirhinal gyrus
nTPM: 44.5
1847 Female, age 91, left hemisphere 50.1
1841 Female, age 85, right hemisphere 45.5
1794 Male, age 80, right hemisphere 44.4
2521 Female, age 94, right hemisphere 42.8
2848 Male, age 76, right hemisphere 39.5
Subiculum
nTPM: 34.9
1977 Female, age 85, both hemispheres 38.4
2438 Female, age 94, left hemisphere 38.3
1901 Male, age 80, both hemispheres 36.6
2619 Male, age 74, both hemispheres 32.7
2729 Female, age 91, right hemisphere 32.2
2042 Male, age 76, both hemispheres 31.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 51.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 51.2
Samples: 197

Max nTPM: 151.2
Min nTPM: 21.4
Std nTPM: 20.7
Median nTPM: 46.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 151.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 118.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 104.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 95.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 92.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 88.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 88.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 88.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 87.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 87.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 87.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.4
FF:10169-103B7 60 years, female 82.6
FF:10153-102I9 76 years, female 60.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 39.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 39.7
Samples: 4

Max nTPM: 49.0
Min nTPM: 31.8
Sample A Female 49.0
Sample B Female 44.2
Sample C Male 33.6
Sample D Male 31.8
Entorhinal cortex
nTPM: 28.6
Samples: 4

Max nTPM: 34.8
Min nTPM: 23.1
Sample A Female 32.1
Sample B Female 34.8
Sample C Male 24.4
Sample D Male 23.1
Subiculum
nTPM: 27.8
Samples: 4

Max nTPM: 32.9
Min nTPM: 25.6
Sample A Female 32.9
Sample B Female 26.4
Sample C Male 25.6
Sample D Male 26.4
Ventral hippocampus
nTPM: 31.1
Samples: 4

Max nTPM: 38.8
Min nTPM: 24.5
Sample A Female 36.1
Sample B Female 24.5
Sample C Male 24.9
Sample D Male 38.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 96.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 83.2
Samples: 4

Max nTPM: 86.7
Min nTPM: 77.8
Sample A Male 77.8
Sample B Male 86.7
Sample C Female 84.6
Sample D Female 83.6
Hippocampal formation
nTPM: 96.4
Samples: 4

Max nTPM: 109.9
Min nTPM: 79.0
Sample A Male 109.9
Sample B Male 94.3
Sample C Female 102.3
Sample D Female 79.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.4
71608294 Antisense, RP_050927_01_D09, Mouse strain C57BL/6J (56 days, male) 18.2
293038 Antisense, RP_040609_01_F01, Mouse strain C57BL/6J (56 days, male) 14.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.