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CIR1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:25.7 nTPM
FANTOM5:58.7 Scaled Tags Per Million
Pig:18.6 nTPM
Mouse:25.7 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.5
1833 Male, age 53, unknown 36.0
1870 Female, age 42, unknown 35.9
1830 Male, age 51, unknown 35.8
1827 Male, age 72, unknown 35.6
2219 Male, age 76, both hemispheres 35.0
2019 Male, age 18, unknown 34.3
2828 Female, age 72, unknown 34.3
2666 Male, age 74, left hemisphere 33.8
2411 Female, age 72, unknown 33.6
2586 Male, age 75, left hemisphere 30.7
Dorsal raphe nucleus
nTPM: 34.4
2298 Female, age 72, unknown 35.0
2750 Male, age 76, both hemispheres 34.9
1828 Male, age 53, unknown 34.7
2016 Female, age 72, unknown 34.6
2047 Male, age 72, unknown 32.9
Inferior colliculus
nTPM: 34.8
2849 Male, age 72, unknown 36.9
1848 Female, age 42, unknown 35.2
2097 Female, age 72, unknown 34.3
1890 Male, age 53, unknown 33.0
Median raphe nucleus
nTPM: 36.8
2220 Male, age 76, midline 36.8
Pedunculopontine tegmental nucleus
nTPM: 37.0
2338 Male, age 61, both hemispheres 39.1
1921 Female, age 85, both hemispheres 36.0
2334 Male, age 80, both hemispheres 35.8
Periaquaductal grey, anterior
nTPM: 34.3
1795 Male, age 51, unknown 34.5
1947 Male, age 18, unknown 34.4
2502 Female, age 75, unknown 34.0
Periaquaductal grey, dorsal
nTPM: 36.6
2850 Male, age 76, both hemispheres 41.1
1831 Male, age 72, unknown 35.4
1840 Male, age 53, unknown 34.9
2464 Female, age 72, unknown 34.8
Periaquaductal grey, lateral
nTPM: 36.0
2272 Male, age 74, both hemispheres 36.9
2140 Male, age 76, both hemispheres 36.5
2053 Male, age 18, unknown 34.7
Pretectal area
nTPM: 35.5
2273 Male, age 74, both hemispheres 36.8
2825 Male, age 18, unknown 36.1
2667 Female, age 75, unknown 36.0
1817 Female, age 42, unknown 35.7
2407 Male, age 75, both hemispheres 35.7
2224 Female, age 72, unknown 35.4
1815 Male, age 53, unknown 35.3
1816 Male, age 51, unknown 35.3
2316 Male, age 76, right hemisphere 34.9
1944 Female, age 72, unknown 34.6
2007 Male, age 72, unknown 34.2
Red nucleus
nTPM: 35.2
2725 Female, age 75, unknown 38.8
2823 Male, age 76, right hemisphere 36.4
2503 Female, age 72, unknown 36.2
1821 Female, age 72, unknown 35.8
1865 Male, age 51, unknown 35.2
1904 Male, age 53, unknown 35.1
1954 Female, age 42, unknown 34.9
2227 Male, age 72, unknown 34.9
2785 Male, age 18, unknown 34.1
2769 Male, age 72, unknown 33.9
2588 Male, age 74, left hemisphere 33.5
2584 Male, age 75, left hemisphere 33.4
Substantia nigra
nTPM: 34.4
2409 Female, age 72, unknown 37.2
2699 Male, age 18, unknown 36.2
2241 Male, age 72, unknown 35.4
1889 Female, age 72, unknown 34.9
1941 Male, age 53, unknown 34.8
1916 Female, age 42, unknown 33.5
1851 Male, age 51, unknown 33.2
2590 Female, age 75, unknown 33.2
2665 Male, age 74, both hemispheres 33.1
2583 Male, age 75, right hemisphere 32.9
Superior colliculus
nTPM: 34.8
1895 Male, age 76, right hemisphere 36.4
1913 Female, age 42, unknown 35.9
1995 Male, age 72, unknown 35.7
1839 Male, age 51, unknown 35.2
2587 Male, age 74, left hemisphere 34.9
2261 Male, age 18, unknown 34.7
1796 Male, age 53, unknown 34.4
2087 Female, age 72, unknown 34.3
2664 Male, age 75, both hemispheres 33.4
2668 Female, age 75, unknown 32.9
Ventral tegmental area
nTPM: 34.4
2223 Female, age 72, unknown 35.8
2021 Male, age 53, unknown 35.7
2218 Male, age 76, both hemispheres 35.1
1942 Male, age 51, unknown 33.7
1915 Female, age 42, unknown 33.2
2410 Female, age 72, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 44.3
Min nTPM: 15.5
Std nTPM: 5.2
Median nTPM: 24.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 44.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 39.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 39.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 36.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 35.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 35.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 35.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 34.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.7
FF:10158-103A5 76 years, female 58.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.6
Pig sample Sample description nTPM
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.1
Sample A Female 21.0
Sample B Female 19.2
Sample C Male 17.1
Sample D Male 17.1
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 19.1
Min nTPM: 15.3
Sample B Female 15.3
Sample C Male 19.1
Sample D Male 18.2
Substantia nigra
nTPM: 18.6
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.3
Sample A Female 18.2
Sample B Female 17.3
Sample C Male 21.0
Sample D Male 18.0
Superior colliculi
nTPM: 18.5
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.6
Sample A Female 17.8
Sample B Female 15.6
Sample C Male 20.3
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 27.4
Min nTPM: 24.6
Sample A Male 24.6
Sample B Male 24.8
Sample C Female 27.4
Sample D Female 25.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
69353633 Antisense, RP_050412_02_D07, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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