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SECISBP2L
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:72.7 nTPM
HPA:72.7 nTPM
GTEx:31.5 nTPM
FANTOM5:377.3 Scaled Tags Per Million
Pig:96.2 nTPM
Mouse:55.9 nTPM
Allen mouse:3.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039875
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 72.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.4
2288 Male, age 75, left hemisphere 47.6
2481 Female, age 94, left hemisphere 30.6
2846 Female, age 79, unknown 27.5
1781 Male, age 74, unknown 24.1
1854 Male, age 80, left hemisphere 24.1
2290 Female, age 72, unknown 23.5
2289 Male, age 61, right hemisphere 22.2
1857 Female, age 85, left hemisphere 19.7
Claustrum
nTPM: 41.5
1956 Male, age 74, unknown 66.8
2292 Female, age 85, both hemispheres 54.5
2392 Female, age 94, both hemispheres 52.7
2491 Male, age 75, both hemispheres 45.4
2196 Female, age 79, unknown 42.7
2568 Male, age 61, both hemispheres 36.6
2198 Male, age 80, both hemispheres 30.5
2284 Female, age 91, both hemispheres 26.7
2645 Female, age 72, unknown 17.8
Globus pallidus, externus
nTPM: 58.9
2772 Female, age 79, unknown 68.7
1996 Male, age 80, right hemisphere 67.7
2567 Female, age 72, unknown 54.8
2395 Male, age 75, both hemispheres 54.5
2646 Male, age 61, right hemisphere 48.7
Globus pallidus, internus
nTPM: 72.7
2111 Female, age 85, right hemisphere 94.1
2778 Female, age 91, both hemispheres 91.5
2287 Male, age 75, right hemisphere 86.1
1818 Male, age 74, unknown 63.8
2566 Female, age 72, unknown 63.6
2037 Male, age 80, right hemisphere 59.1
2483 Female, age 94, right hemisphere 51.0
Nucleus accumbens
nTPM: 36.9
2391 Female, age 94, left hemisphere 63.9
2698 Female, age 72, unknown 50.0
2286 Male, age 75, left hemisphere 47.1
2824 Male, age 61, right hemisphere 33.4
2732 Male, age 80, right hemisphere 32.7
1783 Male, age 74, unknown 25.3
1806 Female, age 85, left hemisphere 24.8
1856 Female, age 91, right hemisphere 18.5
Nucleus basalis of Meynert
nTPM: 38.3
2569 Male, age 61, both hemispheres 52.9
2821 Male, age 75, both hemispheres 44.9
2484 Female, age 94, left hemisphere 28.1
2393 Male, age 80, right hemisphere 27.1
Nucleus of the diagonal band
nTPM: 23.5
2029 Male, age 61, right hemisphere 34.0
1812 Female, age 91, both hemispheres 30.5
2775 Male, age 80, right hemisphere 19.8
2195 Female, age 85, both hemispheres 17.0
1979 Male, age 74, unknown 16.0
Olfactory tubercle
nTPM: 21.4
1846 Male, age 80, right hemisphere 24.7
1998 Female, age 91, both hemispheres 21.7
2856 Male, age 75, right hemisphere 20.8
2487 Female, age 94, left hemisphere 18.4
Putamen
nTPM: 31.0
2647 Male, age 75, left hemisphere 43.7
2482 Female, age 94, left hemisphere 41.5
1829 Male, age 74, unknown 38.6
1937 Female, age 91, right hemisphere 30.3
2489 Female, age 72, unknown 24.9
2466 Female, age 79, unknown 21.7
1838 Male, age 80, right hemisphere 16.1
Septal nuclei
nTPM: 23.4
2629 Female, age 94, right hemisphere 30.8
2394 Male, age 61, left hemisphere 29.3
2031 Female, age 72, unknown 25.5
2199 Male, age 80, right hemisphere 22.8
2009 Female, age 91, both hemispheres 19.2
2059 Female, age 85, both hemispheres 18.7
1960 Male, age 74, unknown 17.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.8
Samples: 246

Max nTPM: 68.7
Min nTPM: 12.0
Std nTPM: 9.0
Median nTPM: 23.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 68.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 63.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 60.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 57.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 54.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 53.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 53.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 52.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 49.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 48.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 45.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 143.1
Min nTPM: 9.7
Std nTPM: 12.8
Median nTPM: 20.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 143.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 86.8
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 73.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 68.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 63.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 57.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 52.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 49.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 47.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 46.2
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 44.7
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Brain - Putamen (basal ganglia)
Average nTPM: 31.5
Samples: 205

Max nTPM: 111.0
Min nTPM: 13.5
Std nTPM: 12.5
Median nTPM: 29.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 111.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 82.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 80.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 80.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 65.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 65.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 58.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 57.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 51.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 51.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 48.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 377.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 155.0
FF:10164-103B2 76 years, female 155.0
Globus pallidus
Scaled Tags Per Million: 377.3
FF:10175-103C4 60 years, female 472.0
FF:10161-103A8 76 years, female 282.5
Nucleus accumbens
Scaled Tags Per Million: 238.0
FF:10037-101F1 23-56 years, mixed 238.0
Putamen
Scaled Tags Per Million: 179.1
FF:10176-103C5 60 years, female 179.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 96.2
Pig sample Sample description nTPM
Caudate
nTPM: 57.6
Samples: 4

Max nTPM: 59.7
Min nTPM: 53.0
Sample A Female 59.7
Sample B Female 53.0
Sample C Male 58.2
Sample D Male 59.4
Putamen
nTPM: 96.3
Samples: 4

Max nTPM: 111.8
Min nTPM: 68.8
Sample A Female 111.8
Sample B Female 68.8
Sample C Male 98.0
Sample D Male 106.4
Septum
nTPM: 66.7
Samples: 4

Max nTPM: 77.7
Min nTPM: 55.6
Sample A Female 65.4
Sample B Female 55.6
Sample C Male 68.0
Sample D Male 77.7
Ventral pallidum
nTPM: 83.6
Samples: 4

Max nTPM: 111.1
Min nTPM: 65.9
Sample A Female 65.9
Sample B Female 69.9
Sample C Male 87.6
Sample D Male 111.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.9
Samples: 4

Max nTPM: 57.3
Min nTPM: 54.4
Sample A Male 57.0
Sample B Male 54.7
Sample C Female 57.3
Sample D Female 54.4
Septum
nTPM: 44.5
Samples: 4

Max nTPM: 57.3
Min nTPM: 36.6
Sample A Male 36.6
Sample B Male 39.6
Sample C Female 44.4
Sample D Female 57.3
Ventral forebrain
nTPM: 40.4
Samples: 4

Max nTPM: 43.7
Min nTPM: 36.8
Sample A Male 43.3
Sample B Male 37.8
Sample C Female 36.8
Sample D Female 43.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.5
70203615 Antisense, RP_050519_02_A05, Mouse strain C57BL/6J (56 days, male) 3.5
Pallidum
Expression energy: 2.7
70203615 Antisense, RP_050519_02_A05, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.