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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.1 nTPM
HPA:39.1 nTPM
GTEx:34.9 nTPM
FANTOM5:92.0 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:20.4 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2411 Female, age 72, unknown 44.9
2019 Male, age 18, unknown 41.2
2828 Female, age 72, unknown 39.4
1827 Male, age 72, unknown 38.8
1830 Male, age 51, unknown 36.3
1833 Male, age 53, unknown 35.9
2219 Male, age 76, both hemispheres 35.8
1870 Female, age 42, unknown 34.6
2666 Male, age 74, left hemisphere 32.0
2586 Male, age 75, left hemisphere 18.9
Dorsal raphe nucleus
nTPM: 34.4
2750 Male, age 76, both hemispheres 40.3
2047 Male, age 72, unknown 34.6
2016 Female, age 72, unknown 33.8
1828 Male, age 53, unknown 33.5
2298 Female, age 72, unknown 29.9
Inferior colliculus
nTPM: 35.6
2097 Female, age 72, unknown 38.5
1890 Male, age 53, unknown 37.8
1848 Female, age 42, unknown 35.5
2849 Male, age 72, unknown 30.6
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Pedunculopontine tegmental nucleus
nTPM: 34.5
1921 Female, age 85, both hemispheres 37.4
2338 Male, age 61, both hemispheres 33.2
2334 Male, age 80, both hemispheres 33.0
Periaquaductal grey, anterior
nTPM: 28.3
1947 Male, age 18, unknown 30.2
1795 Male, age 51, unknown 27.8
2502 Female, age 75, unknown 27.0
Periaquaductal grey, dorsal
nTPM: 33.6
2464 Female, age 72, unknown 38.1
1840 Male, age 53, unknown 34.4
1831 Male, age 72, unknown 33.0
2850 Male, age 76, both hemispheres 29.0
Periaquaductal grey, lateral
nTPM: 31.3
2140 Male, age 76, both hemispheres 33.6
2053 Male, age 18, unknown 33.2
2272 Male, age 74, both hemispheres 27.1
Pretectal area
nTPM: 39.1
1944 Female, age 72, unknown 51.3
1816 Male, age 51, unknown 47.9
1817 Female, age 42, unknown 44.5
2007 Male, age 72, unknown 44.0
1815 Male, age 53, unknown 43.9
2667 Female, age 75, unknown 39.9
2316 Male, age 76, right hemisphere 33.8
2273 Male, age 74, both hemispheres 33.4
2407 Male, age 75, both hemispheres 32.6
2224 Female, age 72, unknown 31.3
2825 Male, age 18, unknown 27.4
Red nucleus
nTPM: 37.7
2588 Male, age 74, left hemisphere 46.1
2503 Female, age 72, unknown 43.3
2785 Male, age 18, unknown 41.9
1821 Female, age 72, unknown 40.8
1904 Male, age 53, unknown 39.0
2823 Male, age 76, right hemisphere 38.1
1954 Female, age 42, unknown 37.5
2769 Male, age 72, unknown 36.4
2227 Male, age 72, unknown 35.8
1865 Male, age 51, unknown 35.3
2725 Female, age 75, unknown 30.6
2584 Male, age 75, left hemisphere 27.7
Substantia nigra
nTPM: 38.8
2409 Female, age 72, unknown 47.2
2590 Female, age 75, unknown 45.2
1889 Female, age 72, unknown 43.0
2583 Male, age 75, right hemisphere 41.3
1941 Male, age 53, unknown 37.6
1851 Male, age 51, unknown 37.1
2241 Male, age 72, unknown 35.4
2665 Male, age 74, both hemispheres 34.7
1916 Female, age 42, unknown 33.9
2699 Male, age 18, unknown 32.9
Superior colliculus
nTPM: 36.3
2087 Female, age 72, unknown 42.1
1913 Female, age 42, unknown 41.9
2261 Male, age 18, unknown 39.7
1995 Male, age 72, unknown 39.1
2668 Female, age 75, unknown 37.6
2587 Male, age 74, left hemisphere 37.0
1895 Male, age 76, right hemisphere 36.6
1839 Male, age 51, unknown 34.1
1796 Male, age 53, unknown 32.1
2664 Male, age 75, both hemispheres 22.8
Ventral tegmental area
nTPM: 34.6
2410 Female, age 72, unknown 48.0
2218 Male, age 76, both hemispheres 34.8
1915 Female, age 42, unknown 31.8
2223 Female, age 72, unknown 31.6
1942 Male, age 51, unknown 31.4
2021 Male, age 53, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.9
Samples: 139

Max nTPM: 62.0
Min nTPM: 14.3
Std nTPM: 8.3
Median nTPM: 34.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 62.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 56.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 56.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 56.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 50.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 49.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 49.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 48.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 48.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 47.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.0
FF:10158-103A5 76 years, female 92.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 35.7
Min nTPM: 23.9
Sample A Female 23.9
Sample B Female 23.9
Sample C Male 35.7
Sample D Male 24.4
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 22.8
Min nTPM: 19.0
Sample B Female 22.8
Sample C Male 21.1
Sample D Male 19.0
Substantia nigra
nTPM: 24.8
Samples: 4

Max nTPM: 28.9
Min nTPM: 20.5
Sample A Female 28.5
Sample B Female 21.4
Sample C Male 28.9
Sample D Male 20.5
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 31.6
Min nTPM: 18.5
Sample A Female 21.6
Sample B Female 18.5
Sample C Male 31.6
Sample D Male 24.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 23.1
Min nTPM: 15.5
Sample A Male 15.5
Sample B Male 23.1
Sample C Female 21.6
Sample D Female 21.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
68845592 Antisense, RP_050224_02_B04, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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