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SEPTIN11
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:40.5 nTPM
HPA:40.5 nTPM
GTEx:27.6 nTPM
FANTOM5:119.3 Scaled Tags Per Million
Pig:121.0 nTPM
Mouse:86.0 nTPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003459Antibody HPA005665
Glial cells LowNot detected
Neuronal cells Not detectedLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Hippocampus
nTPM: 9.5
2529 Female, age 94, left hemisphere 16.0
2621 Female, age 67, right hemisphere 15.4
2148 Female, age 91, left hemisphere 13.3
1898 Male, age 80, left hemisphere 7.6
1855 Male, age 76, left hemisphere 4.0
1911 Female, age 85, right hemisphere 1.0
Dentate gyrus
nTPM: 4.5
2246 Female, age 85, both hemispheres 14.0
2531 Female, age 67, both hemispheres 10.5
2530 Female, age 94, left hemisphere 3.0
1927 Female, age 91, both hemispheres 0.0
2010 Male, age 76, both hemispheres 0.0
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 40.5
2613 Female, age 94, left hemisphere 60.5
2686 Male, age 75, right hemisphere 59.9
1938 Female, age 85, left hemisphere 55.6
1787 Male, age 76, left hemisphere 27.4
2764 Male, age 80, right hemisphere 22.2
2117 Female, age 91, right hemisphere 17.6
Hippocampus, CA1
nTPM: 4.9
2527 Male, age 74, both hemispheres 16.9
2082 Female, age 91, right hemisphere 6.3
2045 Male, age 76, both hemispheres 1.4
1873 Female, age 85, both hemispheres 0.0
2749 Male, age 80, left hemisphere 0.0
Hippocampus, CA2
nTPM: 6.2
1940 Female, age 85, left hemisphere 16.9
2113 Female, age 91, right hemisphere 8.3
2249 Male, age 74, both hemispheres 6.5
2437 Female, age 94, left hemisphere 5.9
1892 Male, age 76, both hemispheres 0.0
1963 Male, age 80, left hemisphere 0.0
Hippocampus, CA3
nTPM: 9.5
2861 Female, age 67, both hemispheres 30.6
2620 Female, age 94, left hemisphere 11.2
2137 Male, age 80, left hemisphere 9.3
1891 Female, age 85, both hemispheres 3.9
1867 Male, age 76, both hemispheres 1.8
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 39.5
2622 Female, age 67, right hemisphere 73.3
2692 Male, age 74, both hemispheres 54.3
2532 Female, age 72, left hemisphere 53.9
1933 Female, age 85, both hemispheres 48.8
2693 Female, age 94, both hemispheres 46.1
1850 Male, age 80, both hemispheres 36.7
2245 Female, age 91, both hemispheres 25.7
2250 Female, age 67, right hemisphere 20.0
2018 Male, age 76, both hemispheres 18.4
1990 Female, age 91, right hemisphere 18.2
Perirhinal gyrus
nTPM: 34.9
1841 Female, age 85, right hemisphere 44.3
2521 Female, age 94, right hemisphere 36.5
1847 Female, age 91, left hemisphere 35.1
2848 Male, age 76, right hemisphere 31.6
1794 Male, age 80, right hemisphere 27.3
Subiculum
nTPM: 17.7
2438 Female, age 94, left hemisphere 46.0
2619 Male, age 74, both hemispheres 37.7
1977 Female, age 85, both hemispheres 12.3
1901 Male, age 80, both hemispheres 6.5
2042 Male, age 76, both hemispheres 3.3
2729 Female, age 91, right hemisphere 0.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 27.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.6
Samples: 197

Max nTPM: 58.0
Min nTPM: 13.0
Std nTPM: 8.9
Median nTPM: 26.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 58.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 56.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 56.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 56.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 54.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 53.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 51.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 48.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 46.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 46.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 45.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 119.3
FF:10153-102I9 76 years, female 119.3
FF:10169-103B7 60 years, female 119.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 121.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 83.8
Samples: 4

Max nTPM: 96.7
Min nTPM: 76.0
Sample A Female 79.1
Sample B Female 96.7
Sample C Male 76.0
Sample D Male 83.4
Entorhinal cortex
nTPM: 121.0
Samples: 4

Max nTPM: 126.5
Min nTPM: 115.9
Sample A Female 126.5
Sample B Female 124.1
Sample C Male 117.5
Sample D Male 115.9
Subiculum
nTPM: 115.6
Samples: 4

Max nTPM: 124.7
Min nTPM: 107.9
Sample A Female 121.4
Sample B Female 124.7
Sample C Male 107.9
Sample D Male 108.2
Ventral hippocampus
nTPM: 96.6
Samples: 4

Max nTPM: 107.4
Min nTPM: 82.9
Sample A Female 82.9
Sample B Female 104.9
Sample C Male 107.4
Sample D Male 91.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.0
Samples: 4

Max nTPM: 96.0
Min nTPM: 74.3
Sample A Male 79.4
Sample B Male 94.4
Sample C Female 74.3
Sample D Female 96.0
Hippocampal formation
nTPM: 50.0
Samples: 4

Max nTPM: 65.6
Min nTPM: 40.1
Sample A Male 65.6
Sample B Male 48.8
Sample C Female 40.1
Sample D Female 45.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.