Single cell type - GSTCD - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	GSTCD
Gene descriptionⁱ Full gene name according to HGNC.	Glutathione S-transferase C-terminal domain containing
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular,Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	8

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Early spermatids - Spermatogenesis (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Early spermatids, Oligodendrocyte precursor cells, Late spermatids)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Immune cell enhanced (neutrophil)
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Early spermatids, Oligodendrocyte precursor cells, Late spermatids)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

GSTCD is part of cluster 29 Early spermatids - Spermatogenesis with confidenceⁱ 1
337 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
KLHL7	Kelch like family member 7	0.6831	29
KIAA0753	KIAA0753	0.6720	29
WRN	WRN RecQ like helicase	0.6672	29
HIGD1C	HIG1 hypoxia inducible domain family member 1C	0.6650	23
PIBF1	Progesterone immunomodulatory binding factor 1	0.6625	29
KLF17	Kruppel like factor 17	0.6535	29
C2orf66	Chromosome 2 open reading frame 66	0.6340	29
QRICH2	Glutamine rich 2	0.6129	29
ERICH2	Glutamate rich 2	0.5908	29
EFCAB3	EF-hand calcium binding domain 3	0.5841	29
C12orf60	Chromosome 12 open reading frame 60	0.5833	29
SUN5	Sad1 and UNC84 domain containing 5	0.5814	29
SPACA4	Sperm acrosome associated 4	0.5801	29
TBC1D3I	TBC1 domain family member 3I	0.5774	29
TRIML1	Tripartite motif family like 1	0.5772	29

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	5.8 nTPM
Adipose tissue	7.4 nTPM
Breast	4.1 nTPM

Alveolar cells type 1	6.4 nTPM
Lung	6.4 nTPM

Alveolar cells type 2	3.9 nTPM
Lung	3.9 nTPM

Astrocytes	32.7 nTPM
Brain	32.7 nTPM

B-cells	5.2 nTPM
Bone marrow	12.3 nTPM
Liver	10.8 nTPM
Adipose tissue	6.6 nTPM
Spleen	5.5 nTPM
Lymph node	4.9 nTPM
Breast	4.0 nTPM
Colon	3.2 nTPM
PBMC	2.8 nTPM
Stomach	2.2 nTPM
Kidney	0.0 nTPM

Dendritic cells	2.6 nTPM
Adipose tissue	4.5 nTPM
Breast	3.3 nTPM
PBMC	0.0 nTPM

Endothelial cells	4.6 nTPM
Esophagus	7.3 nTPM
Endometrium	6.3 nTPM
Prostate	5.6 nTPM
Skin	5.5 nTPM
Ovary	5.5 nTPM
Breast	5.5 nTPM
Placenta	5.1 nTPM
Liver	4.6 nTPM
Skeletal muscle	4.2 nTPM
Pancreas	3.9 nTPM
Lung	3.1 nTPM
Testis	3.0 nTPM
Eye	2.4 nTPM
Heart muscle	2.2 nTPM

Fibroblasts	5.0 nTPM
Heart muscle	8.5 nTPM
Ovary	6.5 nTPM
Adipose tissue	5.8 nTPM
Lung	5.6 nTPM
Esophagus	5.5 nTPM
Placenta	4.8 nTPM
Breast	4.3 nTPM
Skeletal muscle	4.2 nTPM
Skin	3.7 nTPM
Stomach	3.0 nTPM
Prostate	2.9 nTPM

Intestinal goblet cells	4.4 nTPM
Small intestine	5.8 nTPM
Colon	4.3 nTPM
Rectum	3.1 nTPM

Macrophages	4.2 nTPM
Endometrium	9.9 nTPM
Testis	9.8 nTPM
Ovary	7.3 nTPM
Adipose tissue	6.2 nTPM
Esophagus	4.8 nTPM
Breast	4.5 nTPM
Lung	4.2 nTPM
Prostate	3.4 nTPM
Stomach	2.9 nTPM
Skeletal muscle	2.7 nTPM
Bone marrow	2.5 nTPM
Kidney	2.3 nTPM
Spleen	2.1 nTPM
PBMC	0.0 nTPM
Pancreas	0.0 nTPM

Paneth cells	1.3 nTPM
Rectum	4.0 nTPM
Colon	0.0 nTPM
Small intestine	0.0 nTPM

Plasma cells	7.1 nTPM
Esophagus	12.3 nTPM
Spleen	10.1 nTPM
Bone marrow	6.6 nTPM
Stomach	3.8 nTPM
Adipose tissue	2.7 nTPM

Respiratory ciliated cells	2.4 nTPM
Bronchus	3.4 nTPM
Lung	1.5 nTPM

Smooth muscle cells	4.9 nTPM
Endometrium	8.3 nTPM
Adipose tissue	8.3 nTPM
Skin	5.6 nTPM
Ovary	5.4 nTPM
Pancreas	4.9 nTPM
Breast	4.5 nTPM
Heart muscle	4.3 nTPM
Bronchus	3.8 nTPM
Prostate	3.4 nTPM
Esophagus	3.1 nTPM
Skeletal muscle	2.7 nTPM

T-cells	2.9 nTPM
Endometrium	5.1 nTPM
Prostate	4.7 nTPM
Adipose tissue	4.0 nTPM
Lymph node	4.0 nTPM
Liver	3.9 nTPM
Bone marrow	3.9 nTPM
Spleen	3.7 nTPM
Breast	3.2 nTPM
Lung	3.0 nTPM
Stomach	2.8 nTPM
Colon	2.4 nTPM
Skin	2.3 nTPM
Skeletal muscle	2.3 nTPM
PBMC	2.1 nTPM
Kidney	1.4 nTPM
Ovary	0.0 nTPM
Esophagus	0.0 nTPM

Basal prostatic cells	3.6 nTPM
Prostate	3.6 nTPM

Cholangiocytes	8.6 nTPM
Liver	8.6 nTPM

Collecting duct cells	9.2 nTPM
Kidney	9.2 nTPM

Cone photoreceptor cells	27.1 nTPM
Eye	27.1 nTPM

Undifferentiated cells	6.1 nTPM
Small intestine	7.0 nTPM
Colon	5.6 nTPM
Rectum	5.6 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC