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HADH
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA:26.3 nTPM
GTEx:27.3 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:41.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
2411 Female, age 72, unknown 24.7
2828 Female, age 72, unknown 24.0
2019 Male, age 18, unknown 23.5
1870 Female, age 42, unknown 23.1
1827 Male, age 72, unknown 23.0
1833 Male, age 53, unknown 23.0
1830 Male, age 51, unknown 21.9
2586 Male, age 75, left hemisphere 21.7
2219 Male, age 76, both hemispheres 21.6
2666 Male, age 74, left hemisphere 20.3
Dorsal raphe nucleus
nTPM: 24.9
2298 Female, age 72, unknown 25.8
2047 Male, age 72, unknown 25.1
2016 Female, age 72, unknown 24.6
2750 Male, age 76, both hemispheres 24.5
1828 Male, age 53, unknown 24.4
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 24.9
1890 Male, age 53, unknown 23.2
2849 Male, age 72, unknown 22.2
1848 Female, age 42, unknown 22.1
Median raphe nucleus
nTPM: 22.7
2220 Male, age 76, midline 22.7
Pedunculopontine tegmental nucleus
nTPM: 22.4
2334 Male, age 80, both hemispheres 23.2
1921 Female, age 85, both hemispheres 22.7
2338 Male, age 61, both hemispheres 21.4
Periaquaductal grey, anterior
nTPM: 22.5
1795 Male, age 51, unknown 23.2
1947 Male, age 18, unknown 22.5
2502 Female, age 75, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 23.7
2850 Male, age 76, both hemispheres 25.1
1840 Male, age 53, unknown 23.9
2464 Female, age 72, unknown 23.3
1831 Male, age 72, unknown 22.3
Periaquaductal grey, lateral
nTPM: 26.3
2272 Male, age 74, both hemispheres 30.7
2140 Male, age 76, both hemispheres 24.9
2053 Male, age 18, unknown 23.1
Pretectal area
nTPM: 23.5
2273 Male, age 74, both hemispheres 30.0
2224 Female, age 72, unknown 25.4
2667 Female, age 75, unknown 24.0
1817 Female, age 42, unknown 22.9
2825 Male, age 18, unknown 22.9
2007 Male, age 72, unknown 22.7
1815 Male, age 53, unknown 22.5
1944 Female, age 72, unknown 22.4
1816 Male, age 51, unknown 22.3
2407 Male, age 75, both hemispheres 22.2
2316 Male, age 76, right hemisphere 21.0
Red nucleus
nTPM: 23.1
2503 Female, age 72, unknown 25.2
2725 Female, age 75, unknown 24.7
1954 Female, age 42, unknown 24.3
1821 Female, age 72, unknown 24.0
1865 Male, age 51, unknown 23.7
2823 Male, age 76, right hemisphere 23.3
2769 Male, age 72, unknown 23.0
1904 Male, age 53, unknown 22.9
2227 Male, age 72, unknown 22.7
2785 Male, age 18, unknown 22.2
2584 Male, age 75, left hemisphere 21.0
2588 Male, age 74, left hemisphere 20.3
Substantia nigra
nTPM: 23.5
1916 Female, age 42, unknown 25.2
2241 Male, age 72, unknown 24.9
1851 Male, age 51, unknown 24.3
2699 Male, age 18, unknown 24.2
2590 Female, age 75, unknown 23.9
1941 Male, age 53, unknown 23.2
1889 Female, age 72, unknown 23.1
2409 Female, age 72, unknown 22.7
2583 Male, age 75, right hemisphere 22.5
2665 Male, age 74, both hemispheres 21.3
Superior colliculus
nTPM: 22.8
2587 Male, age 74, left hemisphere 25.7
2261 Male, age 18, unknown 24.6
1995 Male, age 72, unknown 23.7
1796 Male, age 53, unknown 23.4
2087 Female, age 72, unknown 23.4
1913 Female, age 42, unknown 23.3
1839 Male, age 51, unknown 22.1
1895 Male, age 76, right hemisphere 21.7
2668 Female, age 75, unknown 21.0
2664 Male, age 75, both hemispheres 19.3
Ventral tegmental area
nTPM: 24.2
2410 Female, age 72, unknown 24.9
2223 Female, age 72, unknown 24.7
1915 Female, age 42, unknown 24.6
1942 Male, age 51, unknown 24.2
2021 Male, age 53, unknown 23.9
2218 Male, age 76, both hemispheres 23.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.3
Samples: 139

Max nTPM: 69.1
Min nTPM: 12.9
Std nTPM: 8.0
Median nTPM: 25.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 50.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 43.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 42.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 42.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 42.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 41.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 41.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 39.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.2
Pig sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 24.3
Min nTPM: 10.1
Sample A Female 24.3
Sample B Female 14.1
Sample C Male 10.2
Sample D Male 10.1
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 13.0
Min nTPM: 12.3
Sample B Female 12.7
Sample C Male 12.3
Sample D Male 13.0
Substantia nigra
nTPM: 15.2
Samples: 4

Max nTPM: 17.2
Min nTPM: 12.5
Sample A Female 15.6
Sample B Female 15.4
Sample C Male 12.5
Sample D Male 17.2
Superior colliculi
nTPM: 14.5
Samples: 4

Max nTPM: 16.4
Min nTPM: 12.7
Sample A Female 14.9
Sample B Female 16.4
Sample C Male 12.7
Sample D Male 13.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.6
Samples: 4

Max nTPM: 47.1
Min nTPM: 38.0
Sample A Male 47.1
Sample B Male 38.0
Sample C Female 39.5
Sample D Female 41.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71381046 Antisense, RP_050503_01_F03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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