ABOUTMENU
HELP
NEWS
RGS3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA:37.3 nTPM
GTEx:19.7 nTPM
FANTOM5:66.1 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:25.7 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.8
2481 Female, age 94, left hemisphere 28.2
1781 Male, age 74, unknown 26.5
2288 Male, age 75, left hemisphere 25.3
2846 Female, age 79, unknown 23.8
2290 Female, age 72, unknown 22.1
1857 Female, age 85, left hemisphere 21.9
2289 Male, age 61, right hemisphere 21.5
1854 Male, age 80, left hemisphere 21.1
Claustrum
nTPM: 22.0
2292 Female, age 85, both hemispheres 28.1
1956 Male, age 74, unknown 22.8
2491 Male, age 75, both hemispheres 22.4
2196 Female, age 79, unknown 22.1
2568 Male, age 61, both hemispheres 21.4
2284 Female, age 91, both hemispheres 21.1
2392 Female, age 94, both hemispheres 20.2
2645 Female, age 72, unknown 19.8
2198 Male, age 80, both hemispheres 19.6
Globus pallidus, externus
nTPM: 37.3
1996 Male, age 80, right hemisphere 43.1
2567 Female, age 72, unknown 40.8
2646 Male, age 61, right hemisphere 37.8
2772 Female, age 79, unknown 35.4
2395 Male, age 75, both hemispheres 29.5
Globus pallidus, internus
nTPM: 36.8
2111 Female, age 85, right hemisphere 40.5
2037 Male, age 80, right hemisphere 39.0
2483 Female, age 94, right hemisphere 35.9
2566 Female, age 72, unknown 35.9
2778 Female, age 91, both hemispheres 35.9
1818 Male, age 74, unknown 35.5
2287 Male, age 75, right hemisphere 34.9
Nucleus accumbens
nTPM: 23.6
2286 Male, age 75, left hemisphere 25.7
2391 Female, age 94, left hemisphere 25.7
2732 Male, age 80, right hemisphere 25.7
2824 Male, age 61, right hemisphere 24.1
2698 Female, age 72, unknown 23.8
1783 Male, age 74, unknown 21.6
1806 Female, age 85, left hemisphere 21.1
1856 Female, age 91, right hemisphere 20.9
Nucleus basalis of Meynert
nTPM: 28.2
2569 Male, age 61, both hemispheres 39.4
2821 Male, age 75, both hemispheres 25.9
2484 Female, age 94, left hemisphere 25.7
2393 Male, age 80, right hemisphere 21.8
Nucleus of the diagonal band
nTPM: 22.4
1979 Male, age 74, unknown 25.7
2029 Male, age 61, right hemisphere 23.9
1812 Female, age 91, both hemispheres 22.4
2195 Female, age 85, both hemispheres 20.4
2775 Male, age 80, right hemisphere 19.8
Olfactory tubercle
nTPM: 21.9
2487 Female, age 94, left hemisphere 25.1
2856 Male, age 75, right hemisphere 24.6
1998 Female, age 91, both hemispheres 20.0
1846 Male, age 80, right hemisphere 17.9
Putamen
nTPM: 26.2
2647 Male, age 75, left hemisphere 38.1
2482 Female, age 94, left hemisphere 28.5
2489 Female, age 72, unknown 27.5
1829 Male, age 74, unknown 24.6
2466 Female, age 79, unknown 22.6
1937 Female, age 91, right hemisphere 22.4
1838 Male, age 80, right hemisphere 19.8
Septal nuclei
nTPM: 24.6
2199 Male, age 80, right hemisphere 29.9
2394 Male, age 61, left hemisphere 28.5
2059 Female, age 85, both hemispheres 25.5
2009 Female, age 91, both hemispheres 23.3
2629 Female, age 94, right hemisphere 23.3
1960 Male, age 74, unknown 21.3
2031 Female, age 72, unknown 20.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.5
Samples: 246

Max nTPM: 42.5
Min nTPM: 4.5
Std nTPM: 7.0
Median nTPM: 15.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 42.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 41.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 37.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 37.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 35.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 34.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 34.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 34.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 33.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 32.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 31.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.9
Samples: 246

Max nTPM: 53.6
Min nTPM: 1.8
Std nTPM: 6.4
Median nTPM: 9.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 53.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 37.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 36.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 29.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 28.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 28.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 27.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 25.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 25.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 25.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 25.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 19.7
Samples: 205

Max nTPM: 73.5
Min nTPM: 6.7
Std nTPM: 9.3
Median nTPM: 17.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 73.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 63.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 55.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 55.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 40.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 40.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 39.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 37.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 36.0
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 35.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 35.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.1
FF:10164-103B2 76 years, female 21.1
Globus pallidus
Scaled Tags Per Million: 66.1
FF:10175-103C4 60 years, female 84.4
FF:10161-103A8 76 years, female 47.8
Nucleus accumbens
Scaled Tags Per Million: 23.8
FF:10037-101F1 23-56 years, mixed 23.8
Putamen
Scaled Tags Per Million: 16.0
FF:10176-103C5 60 years, female 16.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.5
Pig sample Sample description nTPM
Caudate
nTPM: 11.6
Samples: 4

Max nTPM: 12.2
Min nTPM: 11.3
Sample A Female 12.2
Sample B Female 11.7
Sample C Male 11.3
Sample D Male 11.3
Putamen
nTPM: 21.5
Samples: 4

Max nTPM: 34.1
Min nTPM: 12.0
Sample A Female 34.1
Sample B Female 12.0
Sample C Male 15.3
Sample D Male 24.6
Septum
nTPM: 20.9
Samples: 4

Max nTPM: 29.2
Min nTPM: 13.9
Sample A Female 20.1
Sample B Female 13.9
Sample C Male 20.2
Sample D Male 29.2
Ventral pallidum
nTPM: 22.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 11.5
Sample A Female 11.5
Sample B Female 16.9
Sample C Male 31.9
Sample D Male 29.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.5
Samples: 4

Max nTPM: 20.3
Min nTPM: 11.5
Sample A Male 20.3
Sample B Male 11.5
Sample C Female 15.2
Sample D Female 19.1
Septum
nTPM: 25.7
Samples: 4

Max nTPM: 32.7
Min nTPM: 20.5
Sample A Male 22.6
Sample B Male 20.5
Sample C Female 27.0
Sample D Female 32.7
Ventral forebrain
nTPM: 21.1
Samples: 4

Max nTPM: 24.8
Min nTPM: 17.2
Sample A Male 24.1
Sample B Male 18.1
Sample C Female 17.2
Sample D Female 24.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
1822 Antisense, RP_040526_01_F12, Mouse strain C57BL/6J (56 days, male) 0.1
1823 Antisense, RP_040526_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.2
1822 Antisense, RP_040526_01_F12, Mouse strain C57BL/6J (56 days, male) 0.2
1823 Antisense, RP_040526_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.