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CLSTN3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA:21.1 nTPM
GTEx:30.3 nTPM
FANTOM5:89.4 Scaled Tags Per Million
Pig:149.4 nTPM
Mouse:195.7 nTPM
Allen mouse:20.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Hippocampus
nTPM: 3.9
1898 Male, age 80, left hemisphere 12.5
2621 Female, age 67, right hemisphere 6.8
1855 Male, age 76, left hemisphere 2.9
2148 Female, age 91, left hemisphere 1.3
1911 Female, age 85, right hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 5.8
1927 Female, age 91, both hemispheres 20.7
2530 Female, age 94, left hemisphere 9.9
2010 Male, age 76, both hemispheres 2.7
2246 Female, age 85, both hemispheres 0.9
2531 Female, age 67, both hemispheres 0.6
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 12.1
2613 Female, age 94, left hemisphere 33.7
2764 Male, age 80, right hemisphere 16.2
1938 Female, age 85, left hemisphere 9.6
1787 Male, age 76, left hemisphere 8.8
2686 Male, age 75, right hemisphere 4.5
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 9.6
2749 Male, age 80, left hemisphere 35.5
1873 Female, age 85, both hemispheres 7.7
2045 Male, age 76, both hemispheres 4.4
2082 Female, age 91, right hemisphere 0.6
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 6.9
1892 Male, age 76, both hemispheres 20.2
2437 Female, age 94, left hemisphere 10.7
1963 Male, age 80, left hemisphere 10.6
1940 Female, age 85, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 7.8
2137 Male, age 80, left hemisphere 16.2
2620 Female, age 94, left hemisphere 16.1
1867 Male, age 76, both hemispheres 12.9
2861 Female, age 67, both hemispheres 1.9
1891 Female, age 85, both hemispheres 0.0
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 11.3
1990 Female, age 91, right hemisphere 20.7
2250 Female, age 67, right hemisphere 20.4
2693 Female, age 94, both hemispheres 18.6
1850 Male, age 80, both hemispheres 12.6
2245 Female, age 91, both hemispheres 12.3
1933 Female, age 85, both hemispheres 12.0
2622 Female, age 67, right hemisphere 10.1
2532 Female, age 72, left hemisphere 5.0
2018 Male, age 76, both hemispheres 1.3
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 21.1
1847 Female, age 91, left hemisphere 40.3
2521 Female, age 94, right hemisphere 25.6
1794 Male, age 80, right hemisphere 21.3
1841 Female, age 85, right hemisphere 12.2
2848 Male, age 76, right hemisphere 6.2
Subiculum
nTPM: 2.4
1977 Female, age 85, both hemispheres 8.0
1901 Male, age 80, both hemispheres 4.4
2619 Male, age 74, both hemispheres 1.3
2438 Female, age 94, left hemisphere 0.9
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.3
Samples: 197

Max nTPM: 127.2
Min nTPM: 1.6
Std nTPM: 26.6
Median nTPM: 21.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 127.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 111.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 105.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 97.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 95.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 95.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 94.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 94.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 92.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 88.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 86.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 89.4
FF:10169-103B7 60 years, female 115.0
FF:10153-102I9 76 years, female 63.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 149.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 130.9
Samples: 4

Max nTPM: 169.2
Min nTPM: 86.5
Sample A Female 169.2
Sample B Female 152.5
Sample C Male 115.4
Sample D Male 86.5
Entorhinal cortex
nTPM: 149.4
Samples: 4

Max nTPM: 166.4
Min nTPM: 141.1
Sample A Female 166.4
Sample B Female 141.1
Sample C Male 147.3
Sample D Male 142.8
Subiculum
nTPM: 118.7
Samples: 4

Max nTPM: 151.9
Min nTPM: 95.9
Sample A Female 151.9
Sample B Female 95.9
Sample C Male 120.2
Sample D Male 106.6
Ventral hippocampus
nTPM: 133.8
Samples: 4

Max nTPM: 180.8
Min nTPM: 74.7
Sample A Female 144.7
Sample B Female 74.7
Sample C Male 180.8
Sample D Male 135.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 195.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 195.7
Samples: 4

Max nTPM: 245.1
Min nTPM: 175.6
Sample A Male 182.6
Sample B Male 179.6
Sample C Female 175.6
Sample D Female 245.1
Hippocampal formation
nTPM: 162.4
Samples: 4

Max nTPM: 182.0
Min nTPM: 138.9
Sample A Male 138.9
Sample B Male 166.5
Sample C Female 182.0
Sample D Female 162.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 20.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.5
69013572 Antisense, RP_050309_02_E12, Mouse strain C57BL/6J (56 days, male) 20.5

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