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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:13.5 nTPM
HPA:13.5 nTPM
GTEx:8.3 nTPM
FANTOM5:29.7 Scaled Tags Per Million
Pig:3.0 nTPM
Mouse:4.2 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016858
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.5
Sample id Sample description nTPM
Hippocampus
nTPM: 11.1
2529 Female, age 94, left hemisphere 12.9
1898 Male, age 80, left hemisphere 12.1
2148 Female, age 91, left hemisphere 11.3
2621 Female, age 67, right hemisphere 11.3
1855 Male, age 76, left hemisphere 10.2
1911 Female, age 85, right hemisphere 8.8
Dentate gyrus
nTPM: 11.5
2528 Male, age 74, both hemispheres 14.5
2530 Female, age 94, left hemisphere 13.7
2010 Male, age 76, both hemispheres 11.7
2531 Female, age 67, both hemispheres 10.2
1927 Female, age 91, both hemispheres 10.1
2246 Female, age 85, both hemispheres 9.0
Entorhinal gyrus
nTPM: 13.5
2764 Male, age 80, right hemisphere 14.5
2117 Female, age 91, right hemisphere 14.2
2686 Male, age 75, right hemisphere 14.0
2613 Female, age 94, left hemisphere 13.7
1787 Male, age 76, left hemisphere 13.0
1938 Female, age 85, left hemisphere 11.8
Hippocampus, CA1
nTPM: 10.9
2082 Female, age 91, right hemisphere 13.0
2527 Male, age 74, both hemispheres 12.7
2749 Male, age 80, left hemisphere 9.9
2045 Male, age 76, both hemispheres 9.7
1873 Female, age 85, both hemispheres 9.1
Hippocampus, CA2
nTPM: 12.8
2249 Male, age 74, both hemispheres 15.6
1940 Female, age 85, left hemisphere 14.2
2437 Female, age 94, left hemisphere 13.7
2113 Female, age 91, right hemisphere 12.4
1892 Male, age 76, both hemispheres 10.7
1963 Male, age 80, left hemisphere 10.6
Hippocampus, CA3
nTPM: 10.7
2436 Male, age 74, both hemispheres 14.0
1867 Male, age 76, both hemispheres 10.9
2861 Female, age 67, both hemispheres 10.6
1891 Female, age 85, both hemispheres 10.5
2137 Male, age 80, left hemisphere 9.3
2620 Female, age 94, left hemisphere 9.0
Parahippocampal cortex
nTPM: 12.8
1990 Female, age 91, right hemisphere 14.8
1850 Male, age 80, both hemispheres 14.7
2692 Male, age 74, both hemispheres 13.7
2693 Female, age 94, both hemispheres 12.8
2532 Female, age 72, left hemisphere 12.6
2245 Female, age 91, both hemispheres 12.3
2018 Male, age 76, both hemispheres 12.2
2622 Female, age 67, right hemisphere 12.2
2250 Female, age 67, right hemisphere 11.8
1933 Female, age 85, both hemispheres 11.2
Perirhinal gyrus
nTPM: 13.1
1847 Female, age 91, left hemisphere 14.7
1794 Male, age 80, right hemisphere 14.4
2521 Female, age 94, right hemisphere 13.8
1841 Female, age 85, right hemisphere 12.4
2848 Male, age 76, right hemisphere 10.3
Subiculum
nTPM: 12.5
2619 Male, age 74, both hemispheres 14.8
2438 Female, age 94, left hemisphere 12.9
2729 Female, age 91, right hemisphere 12.2
1901 Male, age 80, both hemispheres 11.9
2042 Male, age 76, both hemispheres 11.7
1977 Female, age 85, both hemispheres 11.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.3
Samples: 197

Max nTPM: 17.0
Min nTPM: 3.7
Std nTPM: 2.3
Median nTPM: 8.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 17.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 16.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 15.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 14.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 14.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 13.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 13.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 13.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 12.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 12.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 12.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.7
FF:10153-102I9 76 years, female 36.4
FF:10169-103B7 60 years, female 23.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 2.3
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.9
Sample A Female 2.1
Sample B Female 1.9
Sample C Male 2.9
Sample D Male 2.3
Entorhinal cortex
nTPM: 3.0
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.5
Sample A Female 3.5
Sample B Female 3.0
Sample C Male 2.8
Sample D Male 2.5
Subiculum
nTPM: 2.8
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.0
Sample A Female 2.5
Sample B Female 2.0
Sample C Male 3.0
Sample D Male 3.5
Ventral hippocampus
nTPM: 2.7
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 2.3
Sample C Male 3.8
Sample D Male 2.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.2
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.3
Sample A Male 5.5
Sample B Male 4.0
Sample C Female 3.3
Sample D Female 3.8
Hippocampal formation
nTPM: 2.9
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.2
Sample A Male 2.2
Sample B Male 3.0
Sample C Female 2.9
Sample D Female 3.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
112202410 Antisense, RP_110421_01_D05, Mouse strain C57BL/6J (56 days, male) 0.3
662 Antisense, RP_040324_01_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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