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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.9 nTPM
HPA:24.9 nTPM
GTEx:88.6 nTPM
FANTOM5:220.1 Scaled Tags Per Million
Pig:130.8 nTPM
Mouse:620.0 nTPM
Allen mouse:23.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.3
1827 Male, age 72, unknown 10.0
2586 Male, age 75, left hemisphere 3.1
2666 Male, age 74, left hemisphere 0.2
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2019 Male, age 18, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2411 Female, age 72, unknown 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 15.0
2298 Female, age 72, unknown 48.5
2047 Male, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 1.5
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 4.0
2097 Female, age 72, unknown 16.2
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 24.9
2220 Male, age 76, midline 24.9
Pedunculopontine tegmental nucleus
nTPM: 5.2
1921 Female, age 85, both hemispheres 14.9
2334 Male, age 80, both hemispheres 0.7
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 19.9
2502 Female, age 75, unknown 33.6
1947 Male, age 18, unknown 17.4
1795 Male, age 51, unknown 8.6
Periaquaductal grey, dorsal
nTPM: 4.8
1840 Male, age 53, unknown 18.2
2850 Male, age 76, both hemispheres 1.1
1831 Male, age 72, unknown 0.0
2464 Female, age 72, unknown 0.0
Periaquaductal grey, lateral
nTPM: 3.8
2272 Male, age 74, both hemispheres 7.7
2053 Male, age 18, unknown 3.6
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 7.8
2224 Female, age 72, unknown 38.0
1816 Male, age 51, unknown 21.8
2825 Male, age 18, unknown 12.4
1944 Female, age 72, unknown 10.3
2273 Male, age 74, both hemispheres 3.2
1815 Male, age 53, unknown 0.0
1817 Female, age 42, unknown 0.0
2007 Male, age 72, unknown 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
Red nucleus
nTPM: 0.0
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 1.6
1941 Male, age 53, unknown 7.1
1916 Female, age 42, unknown 6.0
1889 Female, age 72, unknown 3.2
1851 Male, age 51, unknown 0.4
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
2665 Male, age 74, both hemispheres 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 2.1
2261 Male, age 18, unknown 13.0
1796 Male, age 53, unknown 8.8
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2087 Female, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 3.6
1915 Female, age 42, unknown 5.6
2223 Female, age 72, unknown 4.5
2021 Male, age 53, unknown 4.3
1942 Male, age 51, unknown 4.2
2218 Male, age 76, both hemispheres 3.2
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.6
Samples: 139

Max nTPM: 452.1
Min nTPM: 14.6
Std nTPM: 77.8
Median nTPM: 62.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 452.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 435.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 290.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 283.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 276.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 259.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 254.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 251.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 245.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 243.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 221.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 220.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.1
FF:10158-103A5 76 years, female 220.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 130.8
Pig sample Sample description nTPM
Midbrain
nTPM: 126.4
Samples: 4

Max nTPM: 173.9
Min nTPM: 74.1
Sample A Female 74.1
Sample B Female 111.8
Sample C Male 145.9
Sample D Male 173.9
Periaqueductal gray
nTPM: 130.8
Samples: 3

Max nTPM: 161.8
Min nTPM: 108.5
Sample B Female 122.1
Sample C Male 161.8
Sample D Male 108.5
Substantia nigra
nTPM: 128.4
Samples: 4

Max nTPM: 191.8
Min nTPM: 51.5
Sample A Female 191.8
Sample B Female 94.0
Sample C Male 176.1
Sample D Male 51.5
Superior colliculi
nTPM: 107.8
Samples: 4

Max nTPM: 152.2
Min nTPM: 53.8
Sample A Female 152.2
Sample B Female 53.8
Sample C Male 107.5
Sample D Male 117.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 620.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 620.0
Samples: 4

Max nTPM: 633.5
Min nTPM: 604.8
Sample A Male 618.7
Sample B Male 622.9
Sample C Female 604.8
Sample D Female 633.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.9
70928293 Antisense, RP_050725_02_C08, Mouse strain C57BL/6J (56 days, male) 23.9
68193013 Antisense, RP_040928_01_C01, Mouse strain C57BL/6J (56 days, male) 23.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.