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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:64.8 nTPM
HPA:64.8 nTPM
GTEx:32.2 nTPM
FANTOM5:71.1 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:8.3 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003086
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 64.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 64.8
2481 Female, age 94, left hemisphere 98.6
2289 Male, age 61, right hemisphere 84.5
2290 Female, age 72, unknown 77.5
1854 Male, age 80, left hemisphere 70.8
1857 Female, age 85, left hemisphere 65.0
2288 Male, age 75, left hemisphere 56.2
1781 Male, age 74, unknown 33.2
2846 Female, age 79, unknown 33.0
Claustrum
nTPM: 29.0
2196 Female, age 79, unknown 40.6
2392 Female, age 94, both hemispheres 34.9
2491 Male, age 75, both hemispheres 34.5
2284 Female, age 91, both hemispheres 32.7
2198 Male, age 80, both hemispheres 29.1
2568 Male, age 61, both hemispheres 27.2
2645 Female, age 72, unknown 25.4
1956 Male, age 74, unknown 22.6
2292 Female, age 85, both hemispheres 13.5
Globus pallidus, externus
nTPM: 58.3
2646 Male, age 61, right hemisphere 101.8
1996 Male, age 80, right hemisphere 66.2
2772 Female, age 79, unknown 49.9
2567 Female, age 72, unknown 37.8
2395 Male, age 75, both hemispheres 35.5
Globus pallidus, internus
nTPM: 45.0
2483 Female, age 94, right hemisphere 84.5
2037 Male, age 80, right hemisphere 53.6
1818 Male, age 74, unknown 39.6
2566 Female, age 72, unknown 36.8
2111 Female, age 85, right hemisphere 34.9
2778 Female, age 91, both hemispheres 33.4
2287 Male, age 75, right hemisphere 32.4
Nucleus accumbens
nTPM: 54.0
2824 Male, age 61, right hemisphere 60.2
1806 Female, age 85, left hemisphere 59.2
2732 Male, age 80, right hemisphere 58.2
2286 Male, age 75, left hemisphere 56.2
2391 Female, age 94, left hemisphere 55.9
2698 Female, age 72, unknown 54.8
1856 Female, age 91, right hemisphere 46.4
1783 Male, age 74, unknown 41.3
Nucleus basalis of Meynert
nTPM: 62.2
2569 Male, age 61, both hemispheres 117.0
2393 Male, age 80, right hemisphere 61.1
2484 Female, age 94, left hemisphere 47.7
2821 Male, age 75, both hemispheres 22.9
Nucleus of the diagonal band
nTPM: 46.5
1979 Male, age 74, unknown 63.6
1812 Female, age 91, both hemispheres 50.0
2775 Male, age 80, right hemisphere 46.7
2195 Female, age 85, both hemispheres 38.8
2029 Male, age 61, right hemisphere 33.6
Olfactory tubercle
nTPM: 45.5
1846 Male, age 80, right hemisphere 69.9
2487 Female, age 94, left hemisphere 44.1
2856 Male, age 75, right hemisphere 41.2
1998 Female, age 91, both hemispheres 26.7
Putamen
nTPM: 54.3
2482 Female, age 94, left hemisphere 73.0
2489 Female, age 72, unknown 63.7
2647 Male, age 75, left hemisphere 63.0
1838 Male, age 80, right hemisphere 56.4
1937 Female, age 91, right hemisphere 50.3
1829 Male, age 74, unknown 42.0
2466 Female, age 79, unknown 31.4
Septal nuclei
nTPM: 53.7
2199 Male, age 80, right hemisphere 74.6
2059 Female, age 85, both hemispheres 71.5
2394 Male, age 61, left hemisphere 57.3
2009 Female, age 91, both hemispheres 51.2
2629 Female, age 94, right hemisphere 45.7
1960 Male, age 74, unknown 37.7
2031 Female, age 72, unknown 37.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.2
Samples: 246

Max nTPM: 81.2
Min nTPM: 2.6
Std nTPM: 14.9
Median nTPM: 29.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 81.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 77.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 77.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 74.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 72.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 72.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 68.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 66.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 64.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 63.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.1
Samples: 246

Max nTPM: 93.5
Min nTPM: 5.0
Std nTPM: 15.0
Median nTPM: 25.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 93.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 89.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 86.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 85.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 77.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 73.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 73.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 68.0
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 66.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 66.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 65.5
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Brain - Putamen (basal ganglia)
Average nTPM: 27.0
Samples: 205

Max nTPM: 72.9
Min nTPM: 3.3
Std nTPM: 13.8
Median nTPM: 24.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 72.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 70.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 70.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 69.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 67.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 65.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 62.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 61.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 56.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 55.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 53.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.1
FF:10164-103B2 76 years, female 71.1
Globus pallidus
Scaled Tags Per Million: 28.9
FF:10161-103A8 76 years, female 39.7
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 44.2
FF:10037-101F1 23-56 years, mixed 44.2
Putamen
Scaled Tags Per Million: 54.6
FF:10176-103C5 60 years, female 54.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.7
Pig sample Sample description nTPM
Caudate
nTPM: 9.6
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.9
Sample A Female 9.9
Sample B Female 9.1
Sample C Male 10.6
Sample D Male 8.9
Putamen
nTPM: 7.5
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.5
Sample A Female 8.6
Sample B Female 6.5
Sample C Male 7.8
Sample D Male 7.2
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.5
Sample A Female 10.6
Sample B Female 10.3
Sample C Male 7.5
Sample D Male 10.2
Ventral pallidum
nTPM: 9.5
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.7
Sample A Female 11.1
Sample B Female 8.7
Sample C Male 8.8
Sample D Male 9.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.3
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.8
Sample A Male 8.4
Sample B Male 7.8
Sample C Female 8.3
Sample D Female 8.5
Septum
nTPM: 7.6
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.7
Sample A Male 6.7
Sample B Male 7.0
Sample C Female 7.1
Sample D Female 9.6
Ventral forebrain
nTPM: 7.1
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.6
Sample A Male 6.7
Sample B Male 8.7
Sample C Female 5.6
Sample D Female 7.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70717363 Antisense, RP_050414_03_D08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70717363 Antisense, RP_050414_03_D08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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