ABOUTMENU
HELP
NEWS
WARS1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.6 nTPM
HPA:52.6 nTPM
GTEx:46.5 nTPM
FANTOM5:54.1 Scaled Tags Per Million
Pig:44.4 nTPM
Mouse:62.6 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.8
2666 Male, age 74, left hemisphere 56.7
2019 Male, age 18, unknown 49.3
2586 Male, age 75, left hemisphere 47.8
1827 Male, age 72, unknown 41.1
1833 Male, age 53, unknown 38.3
2411 Female, age 72, unknown 38.3
1870 Female, age 42, unknown 38.0
2828 Female, age 72, unknown 37.2
1830 Male, age 51, unknown 36.5
2219 Male, age 76, both hemispheres 34.4
Dorsal raphe nucleus
nTPM: 42.9
1828 Male, age 53, unknown 45.3
2047 Male, age 72, unknown 44.1
2750 Male, age 76, both hemispheres 43.9
2298 Female, age 72, unknown 42.7
2016 Female, age 72, unknown 38.5
Inferior colliculus
nTPM: 37.3
1890 Male, age 53, unknown 37.7
2097 Female, age 72, unknown 37.3
2849 Male, age 72, unknown 37.3
1848 Female, age 42, unknown 36.9
Median raphe nucleus
nTPM: 52.6
2220 Male, age 76, midline 52.6
Pedunculopontine tegmental nucleus
nTPM: 42.8
2334 Male, age 80, both hemispheres 46.9
2338 Male, age 61, both hemispheres 44.2
1921 Female, age 85, both hemispheres 37.3
Periaquaductal grey, anterior
nTPM: 40.8
1795 Male, age 51, unknown 41.8
1947 Male, age 18, unknown 41.4
2502 Female, age 75, unknown 39.1
Periaquaductal grey, dorsal
nTPM: 39.8
2850 Male, age 76, both hemispheres 48.5
1831 Male, age 72, unknown 41.8
1840 Male, age 53, unknown 34.5
2464 Female, age 72, unknown 34.4
Periaquaductal grey, lateral
nTPM: 43.3
2272 Male, age 74, both hemispheres 46.1
2140 Male, age 76, both hemispheres 45.6
2053 Male, age 18, unknown 38.3
Pretectal area
nTPM: 42.9
1817 Female, age 42, unknown 51.2
2007 Male, age 72, unknown 50.5
1816 Male, age 51, unknown 49.1
1944 Female, age 72, unknown 49.1
1815 Male, age 53, unknown 46.3
2224 Female, age 72, unknown 40.1
2407 Male, age 75, both hemispheres 39.3
2667 Female, age 75, unknown 38.6
2825 Male, age 18, unknown 37.9
2273 Male, age 74, both hemispheres 36.7
2316 Male, age 76, right hemisphere 33.2
Red nucleus
nTPM: 39.5
1821 Female, age 72, unknown 45.0
2785 Male, age 18, unknown 43.0
2725 Female, age 75, unknown 42.1
1865 Male, age 51, unknown 40.9
2584 Male, age 75, left hemisphere 39.8
2588 Male, age 74, left hemisphere 39.4
1954 Female, age 42, unknown 38.1
2769 Male, age 72, unknown 38.0
2823 Male, age 76, right hemisphere 37.2
1904 Male, age 53, unknown 36.8
2503 Female, age 72, unknown 36.7
2227 Male, age 72, unknown 36.6
Substantia nigra
nTPM: 51.3
1916 Female, age 42, unknown 66.1
1941 Male, age 53, unknown 59.3
1851 Male, age 51, unknown 54.4
2583 Male, age 75, right hemisphere 49.3
1889 Female, age 72, unknown 48.8
2241 Male, age 72, unknown 48.8
2665 Male, age 74, both hemispheres 48.5
2409 Female, age 72, unknown 48.4
2699 Male, age 18, unknown 46.0
2590 Female, age 75, unknown 42.9
Superior colliculus
nTPM: 39.1
2668 Female, age 75, unknown 48.9
2087 Female, age 72, unknown 42.7
2261 Male, age 18, unknown 40.5
1796 Male, age 53, unknown 39.5
2587 Male, age 74, left hemisphere 39.2
1913 Female, age 42, unknown 36.7
1839 Male, age 51, unknown 36.6
1895 Male, age 76, right hemisphere 36.2
2664 Male, age 75, both hemispheres 35.6
1995 Male, age 72, unknown 34.6
Ventral tegmental area
nTPM: 45.1
2218 Male, age 76, both hemispheres 51.0
1915 Female, age 42, unknown 50.1
2410 Female, age 72, unknown 48.2
2021 Male, age 53, unknown 43.0
1942 Male, age 51, unknown 40.9
2223 Female, age 72, unknown 37.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.5
Samples: 139

Max nTPM: 181.4
Min nTPM: 15.0
Std nTPM: 25.6
Median nTPM: 39.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 181.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 147.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 128.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 112.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 105.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 97.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 93.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 93.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 92.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 92.6
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 86.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.1
FF:10158-103A5 76 years, female 54.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.4
Pig sample Sample description nTPM
Midbrain
nTPM: 39.3
Samples: 4

Max nTPM: 51.1
Min nTPM: 31.0
Sample A Female 42.1
Sample B Female 31.0
Sample C Male 51.1
Sample D Male 33.0
Periaqueductal gray
nTPM: 29.5
Samples: 3

Max nTPM: 34.7
Min nTPM: 25.5
Sample B Female 28.3
Sample C Male 34.7
Sample D Male 25.5
Substantia nigra
nTPM: 36.0
Samples: 4

Max nTPM: 44.5
Min nTPM: 29.2
Sample A Female 44.5
Sample B Female 29.2
Sample C Male 40.3
Sample D Male 29.8
Superior colliculi
nTPM: 44.4
Samples: 4

Max nTPM: 62.3
Min nTPM: 30.9
Sample A Female 43.1
Sample B Female 30.9
Sample C Male 62.3
Sample D Male 41.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.6
Samples: 4

Max nTPM: 63.5
Min nTPM: 61.4
Sample A Male 61.4
Sample B Male 62.6
Sample C Female 63.5
Sample D Female 63.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
67978474 Antisense, RP_040923_01_B11, Mouse strain C57BL/6J (56 days, male) 3.0
70919722 Antisense, RP_050713_01_H11, Mouse strain C57BL/6J (56 days, male) 2.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.