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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:3.1 nTPM
HPA:3.1 nTPM
GTEx:8.6 nTPM
FANTOM5:27.3 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:3.1 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA054084
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.2
2289 Male, age 61, right hemisphere 3.3
1781 Male, age 74, unknown 2.1
1857 Female, age 85, left hemisphere 1.7
1854 Male, age 80, left hemisphere 1.4
2288 Male, age 75, left hemisphere 0.6
2290 Female, age 72, unknown 0.5
2846 Female, age 79, unknown 0.1
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 3.1
2284 Female, age 91, both hemispheres 5.0
2645 Female, age 72, unknown 4.8
2568 Male, age 61, both hemispheres 3.8
2491 Male, age 75, both hemispheres 3.3
1956 Male, age 74, unknown 2.5
2198 Male, age 80, both hemispheres 2.5
2196 Female, age 79, unknown 2.1
2292 Female, age 85, both hemispheres 1.9
2392 Female, age 94, both hemispheres 1.6
Globus pallidus, externus
nTPM: 0.4
2567 Female, age 72, unknown 1.1
2646 Male, age 61, right hemisphere 0.9
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
2566 Female, age 72, unknown 0.6
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 1.1
2824 Male, age 61, right hemisphere 2.9
1783 Male, age 74, unknown 2.8
1856 Female, age 91, right hemisphere 1.2
2732 Male, age 80, right hemisphere 1.0
2286 Male, age 75, left hemisphere 0.3
2698 Female, age 72, unknown 0.3
1806 Female, age 85, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.9
2569 Male, age 61, both hemispheres 1.7
2484 Female, age 94, left hemisphere 1.3
2393 Male, age 80, right hemisphere 0.6
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 1.9
2029 Male, age 61, right hemisphere 3.3
2195 Female, age 85, both hemispheres 2.4
2775 Male, age 80, right hemisphere 1.6
1979 Male, age 74, unknown 1.2
1812 Female, age 91, both hemispheres 1.0
Olfactory tubercle
nTPM: 1.5
1998 Female, age 91, both hemispheres 2.9
2487 Female, age 94, left hemisphere 1.8
2856 Male, age 75, right hemisphere 1.2
1846 Male, age 80, right hemisphere 0.2
Putamen
nTPM: 1.2
1838 Male, age 80, right hemisphere 2.4
2647 Male, age 75, left hemisphere 1.9
2489 Female, age 72, unknown 1.3
2466 Female, age 79, unknown 1.2
1937 Female, age 91, right hemisphere 1.1
1829 Male, age 74, unknown 0.4
2482 Female, age 94, left hemisphere 0.1
Septal nuclei
nTPM: 1.2
2059 Female, age 85, both hemispheres 2.9
1960 Male, age 74, unknown 2.6
2199 Male, age 80, right hemisphere 1.6
2009 Female, age 91, both hemispheres 1.2
2031 Female, age 72, unknown 0.2
2629 Female, age 94, right hemisphere 0.2
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.5
Samples: 246

Max nTPM: 15.1
Min nTPM: 1.9
Std nTPM: 2.3
Median nTPM: 7.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 15.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 14.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 14.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 13.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 13.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 13.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 12.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 12.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 12.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 11.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.6
Samples: 246

Max nTPM: 17.6
Min nTPM: 2.6
Std nTPM: 2.8
Median nTPM: 8.5
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 17.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 16.9
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 16.2
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 14.7
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 14.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 14.6
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 14.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 14.5
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 14.4
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 14.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 14.0
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Brain - Putamen (basal ganglia)
Average nTPM: 6.7
Samples: 205

Max nTPM: 13.5
Min nTPM: 2.2
Std nTPM: 2.1
Median nTPM: 6.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 13.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 12.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 11.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 11.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 11.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 11.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 11.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 11.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 10.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 10.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 10.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.3
FF:10164-103B2 76 years, female 27.3
Globus pallidus
Scaled Tags Per Million: 11.5
FF:10161-103A8 76 years, female 16.0
FF:10175-103C4 60 years, female 7.1
Nucleus accumbens
Scaled Tags Per Million: 12.7
FF:10037-101F1 23-56 years, mixed 12.7
Putamen
Scaled Tags Per Million: 14.3
FF:10176-103C5 60 years, female 14.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Caudate
nTPM: 3.7
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 3.9
Sample C Male 4.1
Sample D Male 3.3
Putamen
nTPM: 3.0
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 2.9
Sample C Male 2.7
Sample D Male 3.8
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 3.0
Sample C Male 3.2
Sample D Male 2.9
Ventral pallidum
nTPM: 3.3
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 3.4
Sample C Male 3.7
Sample D Male 3.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.1
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.8
Sample A Male 2.8
Sample B Male 3.0
Sample C Female 3.3
Sample D Female 3.4
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.7
Sample A Male 2.7
Sample B Male 3.0
Sample C Female 2.8
Sample D Female 3.3
Ventral forebrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.6
Sample A Male 3.2
Sample B Male 2.6
Sample C Female 3.3
Sample D Female 3.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68861692 Antisense, RP_050224_02_G06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68861692 Antisense, RP_050224_02_G06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.