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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:1.0 nTPM
HPA:1.0 nTPM
GTEx:3.4 nTPM
FANTOM5:14.6 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:5.9 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA074893
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.7
2289 Male, age 61, right hemisphere 2.2
1857 Female, age 85, left hemisphere 0.5
2288 Male, age 75, left hemisphere 0.5
2290 Female, age 72, unknown 0.5
2846 Female, age 79, unknown 0.5
1781 Male, age 74, unknown 0.4
1854 Male, age 80, left hemisphere 0.4
2481 Female, age 94, left hemisphere 0.3
Claustrum
nTPM: 0.4
2568 Male, age 61, both hemispheres 0.6
2645 Female, age 72, unknown 0.6
2196 Female, age 79, unknown 0.5
2284 Female, age 91, both hemispheres 0.4
2292 Female, age 85, both hemispheres 0.4
2491 Male, age 75, both hemispheres 0.4
2198 Male, age 80, both hemispheres 0.3
1956 Male, age 74, unknown 0.2
2392 Female, age 94, both hemispheres 0.1
Globus pallidus, externus
nTPM: 0.5
2567 Female, age 72, unknown 0.7
2646 Male, age 61, right hemisphere 0.6
2772 Female, age 79, unknown 0.5
1996 Male, age 80, right hemisphere 0.3
2395 Male, age 75, both hemispheres 0.2
Globus pallidus, internus
nTPM: 0.3
2778 Female, age 91, both hemispheres 0.5
1818 Male, age 74, unknown 0.4
2037 Male, age 80, right hemisphere 0.4
2111 Female, age 85, right hemisphere 0.3
2287 Male, age 75, right hemisphere 0.2
2566 Female, age 72, unknown 0.2
2483 Female, age 94, right hemisphere 0.1
Nucleus accumbens
nTPM: 0.7
2732 Male, age 80, right hemisphere 1.9
2824 Male, age 61, right hemisphere 0.7
2286 Male, age 75, left hemisphere 0.6
1783 Male, age 74, unknown 0.5
1806 Female, age 85, left hemisphere 0.4
1856 Female, age 91, right hemisphere 0.4
2391 Female, age 94, left hemisphere 0.4
2698 Female, age 72, unknown 0.3
Nucleus basalis of Meynert
nTPM: 0.6
2393 Male, age 80, right hemisphere 0.6
2484 Female, age 94, left hemisphere 0.6
2569 Male, age 61, both hemispheres 0.5
2821 Male, age 75, both hemispheres 0.5
Nucleus of the diagonal band
nTPM: 0.6
1979 Male, age 74, unknown 1.6
2029 Male, age 61, right hemisphere 0.4
2775 Male, age 80, right hemisphere 0.4
1812 Female, age 91, both hemispheres 0.3
2195 Female, age 85, both hemispheres 0.3
Olfactory tubercle
nTPM: 0.4
2856 Male, age 75, right hemisphere 0.5
1846 Male, age 80, right hemisphere 0.4
1998 Female, age 91, both hemispheres 0.4
2487 Female, age 94, left hemisphere 0.2
Putamen
nTPM: 0.6
1838 Male, age 80, right hemisphere 0.8
2466 Female, age 79, unknown 0.8
2647 Male, age 75, left hemisphere 0.8
1829 Male, age 74, unknown 0.5
2489 Female, age 72, unknown 0.5
1937 Female, age 91, right hemisphere 0.4
2482 Female, age 94, left hemisphere 0.4
Septal nuclei
nTPM: 1.0
2009 Female, age 91, both hemispheres 2.1
2629 Female, age 94, right hemisphere 1.9
2199 Male, age 80, right hemisphere 1.5
2059 Female, age 85, both hemispheres 0.5
1960 Male, age 74, unknown 0.4
2394 Male, age 61, left hemisphere 0.4
2031 Female, age 72, unknown 0.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.4
Samples: 246

Max nTPM: 61.3
Min nTPM: 0.0
Std nTPM: 7.4
Median nTPM: 0.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 61.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 36.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 33.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 33.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 26.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 25.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 25.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 23.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 22.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 20.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.5
Samples: 246

Max nTPM: 36.4
Min nTPM: 0.0
Std nTPM: 4.8
Median nTPM: 0.4
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 36.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 31.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 31.4
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 29.5
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 26.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 18.2
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 17.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 13.7
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 11.2
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 10.2
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 10.1
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Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 2.4
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 2.4
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 2.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 1.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 0.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 0.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 0.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 0.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 0.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 0.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 0.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.6
FF:10164-103B2 76 years, female 14.6
Globus pallidus
Scaled Tags Per Million: 3.0
FF:10161-103A8 76 years, female 3.7
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 7.4
FF:10037-101F1 23-56 years, mixed 7.4
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.6
Samples: 4

Max nTPM: 8.3
Min nTPM: 4.5
Sample A Female 4.6
Sample B Female 5.0
Sample C Male 8.3
Sample D Male 4.5
Putamen
nTPM: 3.1
Samples: 4

Max nTPM: 5.2
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 1.8
Sample C Male 5.2
Sample D Male 3.8
Septum
nTPM: 3.5
Samples: 4

Max nTPM: 6.3
Min nTPM: 2.1
Sample A Female 2.5
Sample B Female 2.1
Sample C Male 3.0
Sample D Male 6.3
Ventral pallidum
nTPM: 2.7
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.8
Sample A Female 2.2
Sample B Female 1.8
Sample C Male 3.2
Sample D Male 3.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.6
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.9
Sample A Male 3.4
Sample B Male 1.9
Sample C Female 2.2
Sample D Female 2.8
Septum
nTPM: 5.9
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.1
Sample A Male 4.1
Sample B Male 6.8
Sample C Female 7.0
Sample D Female 5.8
Ventral forebrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.9
Sample A Male 1.8
Sample B Male 1.4
Sample C Female 0.9
Sample D Female 2.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
76135594 Antisense, RP_060601_01_A07, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
76135594 Antisense, RP_060601_01_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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