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PTRH2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA:26.1 nTPM
GTEx:17.0 nTPM
FANTOM5:25.6 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:11.1 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.7
1870 Female, age 42, unknown 25.1
1827 Male, age 72, unknown 24.7
2411 Female, age 72, unknown 24.6
1833 Male, age 53, unknown 23.9
1830 Male, age 51, unknown 23.6
2019 Male, age 18, unknown 23.6
2219 Male, age 76, both hemispheres 23.5
2828 Female, age 72, unknown 23.0
2666 Male, age 74, left hemisphere 22.7
2586 Male, age 75, left hemisphere 21.9
Dorsal raphe nucleus
nTPM: 24.0
2750 Male, age 76, both hemispheres 25.5
2298 Female, age 72, unknown 24.4
2047 Male, age 72, unknown 23.9
1828 Male, age 53, unknown 23.7
2016 Female, age 72, unknown 22.4
Inferior colliculus
nTPM: 23.7
2097 Female, age 72, unknown 24.5
2849 Male, age 72, unknown 24.1
1848 Female, age 42, unknown 23.4
1890 Male, age 53, unknown 23.0
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Pedunculopontine tegmental nucleus
nTPM: 25.1
2338 Male, age 61, both hemispheres 25.6
2334 Male, age 80, both hemispheres 25.3
1921 Female, age 85, both hemispheres 24.6
Periaquaductal grey, anterior
nTPM: 23.9
1947 Male, age 18, unknown 25.1
1795 Male, age 51, unknown 23.4
2502 Female, age 75, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 23.8
2850 Male, age 76, both hemispheres 26.1
1840 Male, age 53, unknown 23.2
1831 Male, age 72, unknown 23.1
2464 Female, age 72, unknown 22.8
Periaquaductal grey, lateral
nTPM: 23.3
2272 Male, age 74, both hemispheres 23.4
2140 Male, age 76, both hemispheres 23.3
2053 Male, age 18, unknown 23.2
Pretectal area
nTPM: 24.4
1815 Male, age 53, unknown 25.2
1816 Male, age 51, unknown 25.2
2007 Male, age 72, unknown 25.2
1817 Female, age 42, unknown 25.1
2667 Female, age 75, unknown 25.1
1944 Female, age 72, unknown 24.4
2407 Male, age 75, both hemispheres 24.0
2224 Female, age 72, unknown 23.9
2825 Male, age 18, unknown 23.7
2273 Male, age 74, both hemispheres 23.4
2316 Male, age 76, right hemisphere 23.2
Red nucleus
nTPM: 24.2
2725 Female, age 75, unknown 26.2
1821 Female, age 72, unknown 25.0
2823 Male, age 76, right hemisphere 24.6
1954 Female, age 42, unknown 24.5
1865 Male, age 51, unknown 24.4
2503 Female, age 72, unknown 24.1
1904 Male, age 53, unknown 23.9
2227 Male, age 72, unknown 23.8
2785 Male, age 18, unknown 23.6
2584 Male, age 75, left hemisphere 23.5
2769 Male, age 72, unknown 23.4
2588 Male, age 74, left hemisphere 23.2
Substantia nigra
nTPM: 24.5
2409 Female, age 72, unknown 27.1
1889 Female, age 72, unknown 25.5
1941 Male, age 53, unknown 25.1
2241 Male, age 72, unknown 25.0
1851 Male, age 51, unknown 24.5
1916 Female, age 42, unknown 24.2
2699 Male, age 18, unknown 23.8
2583 Male, age 75, right hemisphere 23.6
2665 Male, age 74, both hemispheres 23.5
2590 Female, age 75, unknown 22.7
Superior colliculus
nTPM: 23.8
1895 Male, age 76, right hemisphere 24.8
1796 Male, age 53, unknown 24.7
2261 Male, age 18, unknown 24.5
1913 Female, age 42, unknown 24.3
2087 Female, age 72, unknown 24.0
2668 Female, age 75, unknown 23.9
2587 Male, age 74, left hemisphere 23.3
1839 Male, age 51, unknown 23.2
1995 Male, age 72, unknown 22.8
2664 Male, age 75, both hemispheres 22.6
Ventral tegmental area
nTPM: 24.2
2218 Male, age 76, both hemispheres 25.6
2223 Female, age 72, unknown 24.6
1942 Male, age 51, unknown 24.1
2410 Female, age 72, unknown 23.9
1915 Female, age 42, unknown 23.5
2021 Male, age 53, unknown 23.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 31.9
Min nTPM: 9.6
Std nTPM: 4.1
Median nTPM: 16.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 29.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 28.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 28.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 27.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 26.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 24.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 24.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 22.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.6
FF:10158-103A5 76 years, female 25.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.4
Sample A Female 6.3
Sample B Female 5.4
Sample C Male 4.6
Sample D Male 4.4
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.5
Min nTPM: 3.6
Sample B Female 3.7
Sample C Male 3.6
Sample D Male 4.5
Substantia nigra
nTPM: 4.8
Samples: 4

Max nTPM: 7.3
Min nTPM: 3.0
Sample A Female 7.3
Sample B Female 4.3
Sample C Male 4.4
Sample D Male 3.0
Superior colliculi
nTPM: 5.0
Samples: 4

Max nTPM: 6.8
Min nTPM: 3.6
Sample A Female 6.8
Sample B Female 3.6
Sample C Male 5.1
Sample D Male 4.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.6
Sample A Male 10.7
Sample B Male 11.8
Sample C Female 10.6
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68633318 Antisense, RP_050125_02_F09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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