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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.8 nTPM
HPA:53.8 nTPM
GTEx:32.2 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:50.5 nTPM
Mouse:22.1 nTPM
Allen mouse:6.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.8
1781 Male, age 74, unknown 47.1
2846 Female, age 79, unknown 47.1
2289 Male, age 61, right hemisphere 44.4
2288 Male, age 75, left hemisphere 44.2
2481 Female, age 94, left hemisphere 42.6
1857 Female, age 85, left hemisphere 42.2
2290 Female, age 72, unknown 42.2
1854 Male, age 80, left hemisphere 40.9
Claustrum
nTPM: 51.9
2568 Male, age 61, both hemispheres 56.5
2645 Female, age 72, unknown 56.3
2292 Female, age 85, both hemispheres 55.7
2284 Female, age 91, both hemispheres 52.4
2198 Male, age 80, both hemispheres 52.1
2196 Female, age 79, unknown 50.7
1956 Male, age 74, unknown 50.5
2392 Female, age 94, both hemispheres 46.4
2491 Male, age 75, both hemispheres 46.1
Globus pallidus, externus
nTPM: 48.0
2395 Male, age 75, both hemispheres 57.6
2772 Female, age 79, unknown 48.1
1996 Male, age 80, right hemisphere 46.5
2567 Female, age 72, unknown 45.5
2646 Male, age 61, right hemisphere 42.4
Globus pallidus, internus
nTPM: 45.3
2566 Female, age 72, unknown 49.5
2037 Male, age 80, right hemisphere 48.7
2778 Female, age 91, both hemispheres 46.9
1818 Male, age 74, unknown 45.8
2111 Female, age 85, right hemisphere 44.4
2287 Male, age 75, right hemisphere 41.7
2483 Female, age 94, right hemisphere 40.1
Nucleus accumbens
nTPM: 43.1
2698 Female, age 72, unknown 46.5
2732 Male, age 80, right hemisphere 45.4
2391 Female, age 94, left hemisphere 44.6
1856 Female, age 91, right hemisphere 43.9
1783 Male, age 74, unknown 42.4
2286 Male, age 75, left hemisphere 41.8
1806 Female, age 85, left hemisphere 40.9
2824 Male, age 61, right hemisphere 39.0
Nucleus basalis of Meynert
nTPM: 46.9
2821 Male, age 75, both hemispheres 56.9
2393 Male, age 80, right hemisphere 44.5
2484 Female, age 94, left hemisphere 44.0
2569 Male, age 61, both hemispheres 42.2
Nucleus of the diagonal band
nTPM: 53.8
1812 Female, age 91, both hemispheres 58.1
2195 Female, age 85, both hemispheres 54.8
2775 Male, age 80, right hemisphere 54.0
2029 Male, age 61, right hemisphere 53.3
1979 Male, age 74, unknown 48.7
Olfactory tubercle
nTPM: 52.4
2487 Female, age 94, left hemisphere 54.7
1846 Male, age 80, right hemisphere 53.0
1998 Female, age 91, both hemispheres 51.5
2856 Male, age 75, right hemisphere 50.3
Putamen
nTPM: 42.6
2482 Female, age 94, left hemisphere 44.7
1829 Male, age 74, unknown 43.1
2647 Male, age 75, left hemisphere 43.0
1937 Female, age 91, right hemisphere 42.4
2466 Female, age 79, unknown 42.4
2489 Female, age 72, unknown 42.4
1838 Male, age 80, right hemisphere 40.2
Septal nuclei
nTPM: 52.8
1960 Male, age 74, unknown 55.4
2629 Female, age 94, right hemisphere 55.2
2031 Female, age 72, unknown 54.4
2009 Female, age 91, both hemispheres 53.4
2199 Male, age 80, right hemisphere 51.3
2059 Female, age 85, both hemispheres 50.1
2394 Male, age 61, left hemisphere 49.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.0
Samples: 246

Max nTPM: 59.6
Min nTPM: 14.3
Std nTPM: 7.6
Median nTPM: 29.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 57.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 55.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 54.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 54.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 53.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 51.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 51.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 48.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 45.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.2
Samples: 246

Max nTPM: 55.7
Min nTPM: 13.8
Std nTPM: 7.7
Median nTPM: 31.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 55.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 52.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 52.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 52.6
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 52.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 51.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 50.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 49.3
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 48.9
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 47.5
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 47.5
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Brain - Putamen (basal ganglia)
Average nTPM: 28.8
Samples: 205

Max nTPM: 51.1
Min nTPM: 13.3
Std nTPM: 6.8
Median nTPM: 28.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 51.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 49.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 47.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 47.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 46.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 45.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 45.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 43.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 42.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 41.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 41.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 68.0
FF:10164-103B2 76 years, female 68.0
Globus pallidus
Scaled Tags Per Million: 66.9
FF:10161-103A8 76 years, female 91.9
FF:10175-103C4 60 years, female 41.8
Nucleus accumbens
Scaled Tags Per Million: 80.5
FF:10037-101F1 23-56 years, mixed 80.5
Putamen
Scaled Tags Per Million: 58.0
FF:10176-103C5 60 years, female 58.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.5
Pig sample Sample description nTPM
Caudate
nTPM: 37.0
Samples: 4

Max nTPM: 44.1
Min nTPM: 29.8
Sample A Female 37.1
Sample B Female 44.1
Sample C Male 36.8
Sample D Male 29.8
Putamen
nTPM: 36.9
Samples: 4

Max nTPM: 41.6
Min nTPM: 33.1
Sample A Female 41.6
Sample B Female 33.1
Sample C Male 35.7
Sample D Male 37.3
Septum
nTPM: 50.5
Samples: 4

Max nTPM: 57.4
Min nTPM: 41.6
Sample A Female 57.4
Sample B Female 41.6
Sample C Male 54.2
Sample D Male 48.7
Ventral pallidum
nTPM: 36.9
Samples: 4

Max nTPM: 39.7
Min nTPM: 34.4
Sample A Female 36.2
Sample B Female 37.1
Sample C Male 39.7
Sample D Male 34.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.8
Samples: 4

Max nTPM: 20.9
Min nTPM: 15.0
Sample A Male 19.2
Sample B Male 15.0
Sample C Female 20.9
Sample D Female 16.1
Septum
nTPM: 19.4
Samples: 4

Max nTPM: 24.8
Min nTPM: 17.0
Sample A Male 24.8
Sample B Male 17.6
Sample C Female 17.0
Sample D Female 18.2
Ventral forebrain
nTPM: 22.1
Samples: 4

Max nTPM: 27.1
Min nTPM: 18.6
Sample A Male 22.3
Sample B Male 20.5
Sample C Female 18.6
Sample D Female 27.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.8
71992067 Antisense, RP_051012_04_A12, Mouse strain C57BL/6J (56 days, male) 5.8
Pallidum
Expression energy: 6.8
71992067 Antisense, RP_051012_04_A12, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.