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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:122.2 nTPM
HPA:122.2 nTPM
GTEx:189.5 nTPM
FANTOM5:113.8 Scaled Tags Per Million
Pig:76.9 nTPM
Mouse:259.0 nTPM
Allen mouse:12.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021407Antibody CAB010005
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 122.2
Sample id Sample description nTPM
Hippocampus
nTPM: 117.8
2621 Female, age 67, right hemisphere 135.2
1855 Male, age 76, left hemisphere 131.0
1898 Male, age 80, left hemisphere 129.1
2529 Female, age 94, left hemisphere 110.4
1911 Female, age 85, right hemisphere 103.1
2148 Female, age 91, left hemisphere 98.2
Dentate gyrus
nTPM: 113.1
2530 Female, age 94, left hemisphere 136.2
2010 Male, age 76, both hemispheres 132.9
1927 Female, age 91, both hemispheres 106.6
2246 Female, age 85, both hemispheres 105.2
2531 Female, age 67, both hemispheres 105.0
2528 Male, age 74, both hemispheres 92.8
Entorhinal gyrus
nTPM: 122.2
2613 Female, age 94, left hemisphere 142.4
2764 Male, age 80, right hemisphere 133.0
1787 Male, age 76, left hemisphere 126.6
1938 Female, age 85, left hemisphere 121.7
2686 Male, age 75, right hemisphere 108.3
2117 Female, age 91, right hemisphere 101.3
Hippocampus, CA1
nTPM: 110.9
2749 Male, age 80, left hemisphere 143.8
1873 Female, age 85, both hemispheres 118.5
2045 Male, age 76, both hemispheres 103.0
2527 Male, age 74, both hemispheres 100.0
2082 Female, age 91, right hemisphere 89.2
Hippocampus, CA2
nTPM: 108.3
1963 Male, age 80, left hemisphere 132.4
1892 Male, age 76, both hemispheres 122.2
2437 Female, age 94, left hemisphere 109.8
1940 Female, age 85, left hemisphere 105.0
2113 Female, age 91, right hemisphere 91.0
2249 Male, age 74, both hemispheres 89.6
Hippocampus, CA3
nTPM: 111.3
2861 Female, age 67, both hemispheres 136.0
2137 Male, age 80, left hemisphere 122.4
1867 Male, age 76, both hemispheres 119.6
2620 Female, age 94, left hemisphere 107.6
1891 Female, age 85, both hemispheres 95.6
2436 Male, age 74, both hemispheres 86.7
Parahippocampal cortex
nTPM: 114.9
2245 Female, age 91, both hemispheres 126.2
1933 Female, age 85, both hemispheres 125.7
2532 Female, age 72, left hemisphere 124.2
2622 Female, age 67, right hemisphere 121.0
1850 Male, age 80, both hemispheres 116.6
2250 Female, age 67, right hemisphere 112.9
2018 Male, age 76, both hemispheres 111.7
2692 Male, age 74, both hemispheres 107.6
2693 Female, age 94, both hemispheres 102.0
1990 Female, age 91, right hemisphere 100.6
Perirhinal gyrus
nTPM: 114.9
1847 Female, age 91, left hemisphere 126.7
1794 Male, age 80, right hemisphere 123.4
1841 Female, age 85, right hemisphere 110.3
2521 Female, age 94, right hemisphere 109.3
2848 Male, age 76, right hemisphere 104.6
Subiculum
nTPM: 109.3
2042 Male, age 76, both hemispheres 118.7
1901 Male, age 80, both hemispheres 114.5
1977 Female, age 85, both hemispheres 114.4
2438 Female, age 94, left hemisphere 112.3
2619 Male, age 74, both hemispheres 110.0
2729 Female, age 91, right hemisphere 86.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 189.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 189.5
Samples: 197

Max nTPM: 365.4
Min nTPM: 71.4
Std nTPM: 50.2
Median nTPM: 182.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 365.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 322.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 313.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 313.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 303.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 301.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 297.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 294.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 293.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 291.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 282.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 113.8
FF:10169-103B7 60 years, female 114.0
FF:10153-102I9 76 years, female 113.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 76.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 76.9
Samples: 4

Max nTPM: 103.7
Min nTPM: 57.8
Sample A Female 103.7
Sample B Female 75.3
Sample C Male 70.7
Sample D Male 57.8
Entorhinal cortex
nTPM: 76.9
Samples: 4

Max nTPM: 96.5
Min nTPM: 65.5
Sample A Female 78.1
Sample B Female 67.5
Sample C Male 96.5
Sample D Male 65.5
Subiculum
nTPM: 76.5
Samples: 4

Max nTPM: 98.7
Min nTPM: 67.7
Sample A Female 98.7
Sample B Female 67.7
Sample C Male 71.1
Sample D Male 68.4
Ventral hippocampus
nTPM: 73.7
Samples: 4

Max nTPM: 89.8
Min nTPM: 53.5
Sample A Female 69.5
Sample B Female 53.5
Sample C Male 89.8
Sample D Male 82.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 259.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 259.0
Samples: 4

Max nTPM: 295.9
Min nTPM: 229.0
Sample A Male 246.2
Sample B Male 229.0
Sample C Female 264.8
Sample D Female 295.9
Hippocampal formation
nTPM: 258.2
Samples: 4

Max nTPM: 275.7
Min nTPM: 239.5
Sample A Male 248.3
Sample B Male 239.5
Sample C Female 275.7
Sample D Female 269.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.5
75774677 Antisense, RP_060530_01_D02, Mouse strain C57BL/6J (56 days, male) 16.8
633678 Antisense, RP_040907_02_A10, Mouse strain C57BL/6J (56 days, male) 8.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.