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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:41.1 nTPM
HPA:41.1 nTPM
GTEx:40.3 nTPM
FANTOM5:25.4 Scaled Tags Per Million
Pig:8.1 nTPM
Mouse:28.9 nTPM
Allen mouse:4.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA065831
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Hippocampus
nTPM: 39.9
1898 Male, age 80, left hemisphere 42.8
2148 Female, age 91, left hemisphere 40.2
1911 Female, age 85, right hemisphere 39.9
1855 Male, age 76, left hemisphere 39.7
2529 Female, age 94, left hemisphere 38.8
2621 Female, age 67, right hemisphere 37.8
Dentate gyrus
nTPM: 39.6
1927 Female, age 91, both hemispheres 41.2
2010 Male, age 76, both hemispheres 40.8
2528 Male, age 74, both hemispheres 39.4
2530 Female, age 94, left hemisphere 39.3
2246 Female, age 85, both hemispheres 39.1
2531 Female, age 67, both hemispheres 38.1
Entorhinal gyrus
nTPM: 40.3
1938 Female, age 85, left hemisphere 41.9
2117 Female, age 91, right hemisphere 41.8
2764 Male, age 80, right hemisphere 40.5
1787 Male, age 76, left hemisphere 40.0
2686 Male, age 75, right hemisphere 39.2
2613 Female, age 94, left hemisphere 38.3
Hippocampus, CA1
nTPM: 41.1
2749 Male, age 80, left hemisphere 44.7
2045 Male, age 76, both hemispheres 42.3
1873 Female, age 85, both hemispheres 41.8
2082 Female, age 91, right hemisphere 38.4
2527 Male, age 74, both hemispheres 38.3
Hippocampus, CA2
nTPM: 39.8
1892 Male, age 76, both hemispheres 42.1
1963 Male, age 80, left hemisphere 41.7
1940 Female, age 85, left hemisphere 40.6
2249 Male, age 74, both hemispheres 39.0
2113 Female, age 91, right hemisphere 38.0
2437 Female, age 94, left hemisphere 37.6
Hippocampus, CA3
nTPM: 39.8
1867 Male, age 76, both hemispheres 42.4
2137 Male, age 80, left hemisphere 42.0
1891 Female, age 85, both hemispheres 40.7
2620 Female, age 94, left hemisphere 40.3
2861 Female, age 67, both hemispheres 36.9
2436 Male, age 74, both hemispheres 36.6
Parahippocampal cortex
nTPM: 39.0
1850 Male, age 80, both hemispheres 40.8
1933 Female, age 85, both hemispheres 40.8
2018 Male, age 76, both hemispheres 39.7
1990 Female, age 91, right hemisphere 39.6
2245 Female, age 91, both hemispheres 39.4
2692 Male, age 74, both hemispheres 39.3
2532 Female, age 72, left hemisphere 38.4
2250 Female, age 67, right hemisphere 38.1
2622 Female, age 67, right hemisphere 37.2
2693 Female, age 94, both hemispheres 37.2
Perirhinal gyrus
nTPM: 40.4
1794 Male, age 80, right hemisphere 42.0
1847 Female, age 91, left hemisphere 41.7
1841 Female, age 85, right hemisphere 41.6
2848 Male, age 76, right hemisphere 38.6
2521 Female, age 94, right hemisphere 37.8
Subiculum
nTPM: 40.8
1901 Male, age 80, both hemispheres 42.0
2042 Male, age 76, both hemispheres 41.3
2438 Female, age 94, left hemisphere 41.3
1977 Female, age 85, both hemispheres 40.4
2729 Female, age 91, right hemisphere 39.8
2619 Male, age 74, both hemispheres 39.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.3
Samples: 197

Max nTPM: 64.3
Min nTPM: 23.6
Std nTPM: 7.4
Median nTPM: 40.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 64.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 60.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 58.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 58.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 57.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 55.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 55.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 55.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 54.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 53.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 53.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.4
FF:10169-103B7 60 years, female 26.1
FF:10153-102I9 76 years, female 24.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.6
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.1
Sample A Female 8.8
Sample B Female 8.5
Sample C Male 6.1
Sample D Male 6.9
Entorhinal cortex
nTPM: 6.8
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.4
Sample A Female 6.8
Sample B Female 7.0
Sample C Male 7.0
Sample D Male 6.4
Subiculum
nTPM: 7.9
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.6
Sample A Female 9.3
Sample B Female 7.6
Sample C Male 8.1
Sample D Male 6.6
Ventral hippocampus
nTPM: 8.2
Samples: 4

Max nTPM: 10.6
Min nTPM: 6.2
Sample A Female 9.0
Sample B Female 6.2
Sample C Male 10.6
Sample D Male 6.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.7
Samples: 4

Max nTPM: 25.2
Min nTPM: 23.1
Sample A Male 25.2
Sample B Male 23.1
Sample C Female 23.2
Sample D Female 23.3
Hippocampal formation
nTPM: 29.0
Samples: 4

Max nTPM: 31.4
Min nTPM: 26.6
Sample A Male 26.6
Sample B Male 28.2
Sample C Female 31.4
Sample D Female 29.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.1
68442871 Antisense, RP_041214_02_H07, Mouse strain C57BL/6J (56 days, male) 4.7
74819239 Antisense, RP_060315_02_C03, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.