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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:671.4 nTPM
HPA:671.4 nTPM
GTEx:560.4 nTPM
FANTOM5:292.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 671.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 609.9
2828 Female, age 72, unknown 662.7
2666 Male, age 74, left hemisphere 661.7
1870 Female, age 42, unknown 643.1
1830 Male, age 51, unknown 608.7
1827 Male, age 72, unknown 604.8
1833 Male, age 53, unknown 604.1
2411 Female, age 72, unknown 595.4
2019 Male, age 18, unknown 589.0
2586 Male, age 75, left hemisphere 569.1
2219 Male, age 76, both hemispheres 560.0
Dorsal raphe nucleus
nTPM: 630.2
1828 Male, age 53, unknown 661.0
2016 Female, age 72, unknown 630.3
2047 Male, age 72, unknown 624.2
2750 Male, age 76, both hemispheres 620.1
2298 Female, age 72, unknown 615.4
Inferior colliculus
nTPM: 616.1
1848 Female, age 42, unknown 624.5
2097 Female, age 72, unknown 620.9
2849 Male, age 72, unknown 614.6
1890 Male, age 53, unknown 604.5
Median raphe nucleus
nTPM: 651.0
2220 Male, age 76, midline 651.0
Pedunculopontine tegmental nucleus
nTPM: 671.4
2338 Male, age 61, both hemispheres 746.0
2334 Male, age 80, both hemispheres 677.2
1921 Female, age 85, both hemispheres 591.1
Periaquaductal grey, anterior
nTPM: 640.9
1947 Male, age 18, unknown 647.2
2502 Female, age 75, unknown 640.5
1795 Male, age 51, unknown 635.1
Periaquaductal grey, dorsal
nTPM: 645.4
2850 Male, age 76, both hemispheres 750.5
1831 Male, age 72, unknown 632.4
2464 Female, age 72, unknown 607.7
1840 Male, age 53, unknown 591.1
Periaquaductal grey, lateral
nTPM: 671.3
2140 Male, age 76, both hemispheres 706.5
2053 Male, age 18, unknown 667.8
2272 Male, age 74, both hemispheres 639.6
Pretectal area
nTPM: 612.6
2825 Male, age 18, unknown 641.9
1817 Female, age 42, unknown 634.9
2316 Male, age 76, right hemisphere 629.9
2224 Female, age 72, unknown 627.4
2667 Female, age 75, unknown 625.0
2273 Male, age 74, both hemispheres 614.5
1944 Female, age 72, unknown 614.0
1815 Male, age 53, unknown 610.2
2007 Male, age 72, unknown 594.4
1816 Male, age 51, unknown 586.3
2407 Male, age 75, both hemispheres 560.0
Red nucleus
nTPM: 641.2
1954 Female, age 42, unknown 670.4
1821 Female, age 72, unknown 663.8
2503 Female, age 72, unknown 659.8
2823 Male, age 76, right hemisphere 657.2
2725 Female, age 75, unknown 656.8
2227 Male, age 72, unknown 653.1
2769 Male, age 72, unknown 652.8
1865 Male, age 51, unknown 649.0
1904 Male, age 53, unknown 630.1
2588 Male, age 74, left hemisphere 623.4
2785 Male, age 18, unknown 606.8
2584 Male, age 75, left hemisphere 571.1
Substantia nigra
nTPM: 621.9
2665 Male, age 74, both hemispheres 667.7
2699 Male, age 18, unknown 666.4
1851 Male, age 51, unknown 650.3
1916 Female, age 42, unknown 636.8
2409 Female, age 72, unknown 616.3
1889 Female, age 72, unknown 613.2
1941 Male, age 53, unknown 610.3
2590 Female, age 75, unknown 608.1
2241 Male, age 72, unknown 587.4
2583 Male, age 75, right hemisphere 562.4
Superior colliculus
nTPM: 618.5
1796 Male, age 53, unknown 666.4
1995 Male, age 72, unknown 655.2
1913 Female, age 42, unknown 644.8
2087 Female, age 72, unknown 631.1
2587 Male, age 74, left hemisphere 630.2
1839 Male, age 51, unknown 610.6
1895 Male, age 76, right hemisphere 598.7
2668 Female, age 75, unknown 596.1
2261 Male, age 18, unknown 591.3
2664 Male, age 75, both hemispheres 560.2
Ventral tegmental area
nTPM: 642.1
1915 Female, age 42, unknown 657.4
2218 Male, age 76, both hemispheres 656.9
2021 Male, age 53, unknown 644.4
2223 Female, age 72, unknown 642.6
1942 Male, age 51, unknown 635.1
2410 Female, age 72, unknown 616.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 560.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 560.4
Samples: 139

Max nTPM: 2223.8
Min nTPM: 80.5
Std nTPM: 375.9
Median nTPM: 450.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 2223.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1970.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1912.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1794.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 1740.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1637.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1275.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1264.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1183.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1152.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1078.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 292.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 292.4
FF:10158-103A5 76 years, female 292.4

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The Human Protein Atlas

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