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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:37.4 nTPM
HPA:37.4 nTPM
GTEx:44.7 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:41.5 nTPM
Allen mouse:5.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA015015
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.1
1781 Male, age 74, unknown 36.7
2288 Male, age 75, left hemisphere 33.8
2846 Female, age 79, unknown 33.8
1857 Female, age 85, left hemisphere 33.2
2290 Female, age 72, unknown 33.1
1854 Male, age 80, left hemisphere 32.0
2289 Male, age 61, right hemisphere 31.6
2481 Female, age 94, left hemisphere 30.8
Claustrum
nTPM: 37.4
2568 Male, age 61, both hemispheres 41.9
2198 Male, age 80, both hemispheres 39.5
2645 Female, age 72, unknown 39.4
2284 Female, age 91, both hemispheres 39.0
2491 Male, age 75, both hemispheres 37.6
1956 Male, age 74, unknown 36.1
2196 Female, age 79, unknown 36.0
2292 Female, age 85, both hemispheres 35.4
2392 Female, age 94, both hemispheres 31.8
Globus pallidus, externus
nTPM: 32.3
2772 Female, age 79, unknown 35.4
2646 Male, age 61, right hemisphere 32.1
1996 Male, age 80, right hemisphere 32.0
2567 Female, age 72, unknown 31.4
2395 Male, age 75, both hemispheres 30.4
Globus pallidus, internus
nTPM: 32.3
2287 Male, age 75, right hemisphere 37.0
2778 Female, age 91, both hemispheres 32.8
1818 Male, age 74, unknown 32.2
2483 Female, age 94, right hemisphere 31.7
2037 Male, age 80, right hemisphere 31.1
2566 Female, age 72, unknown 31.0
2111 Female, age 85, right hemisphere 30.5
Nucleus accumbens
nTPM: 32.4
1856 Female, age 91, right hemisphere 35.5
1783 Male, age 74, unknown 35.0
2286 Male, age 75, left hemisphere 34.5
1806 Female, age 85, left hemisphere 33.7
2698 Female, age 72, unknown 31.6
2824 Male, age 61, right hemisphere 31.1
2732 Male, age 80, right hemisphere 29.3
2391 Female, age 94, left hemisphere 28.8
Nucleus basalis of Meynert
nTPM: 31.1
2569 Male, age 61, both hemispheres 33.2
2484 Female, age 94, left hemisphere 31.3
2821 Male, age 75, both hemispheres 30.6
2393 Male, age 80, right hemisphere 29.2
Nucleus of the diagonal band
nTPM: 36.4
2029 Male, age 61, right hemisphere 38.7
2775 Male, age 80, right hemisphere 38.1
2195 Female, age 85, both hemispheres 37.9
1812 Female, age 91, both hemispheres 36.0
1979 Male, age 74, unknown 31.1
Olfactory tubercle
nTPM: 37.2
2487 Female, age 94, left hemisphere 39.8
1998 Female, age 91, both hemispheres 38.1
2856 Male, age 75, right hemisphere 35.9
1846 Male, age 80, right hemisphere 34.9
Putamen
nTPM: 33.1
2647 Male, age 75, left hemisphere 36.0
2466 Female, age 79, unknown 34.6
1937 Female, age 91, right hemisphere 33.4
2489 Female, age 72, unknown 32.7
1829 Male, age 74, unknown 32.2
1838 Male, age 80, right hemisphere 31.5
2482 Female, age 94, left hemisphere 31.4
Septal nuclei
nTPM: 34.9
1960 Male, age 74, unknown 41.6
2629 Female, age 94, right hemisphere 38.3
2031 Female, age 72, unknown 37.5
2059 Female, age 85, both hemispheres 34.6
2009 Female, age 91, both hemispheres 32.9
2394 Male, age 61, left hemisphere 30.6
2199 Male, age 80, right hemisphere 28.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.9
Samples: 246

Max nTPM: 62.9
Min nTPM: 20.0
Std nTPM: 6.5
Median nTPM: 41.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 62.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 59.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 56.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 55.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 55.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 54.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 53.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 51.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 51.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 51.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.9
Samples: 246

Max nTPM: 85.0
Min nTPM: 18.5
Std nTPM: 8.3
Median nTPM: 40.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 85.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 81.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 62.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 61.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 60.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 60.0
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 59.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 58.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 58.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 57.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 57.2
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Brain - Putamen (basal ganglia)
Average nTPM: 44.7
Samples: 205

Max nTPM: 75.9
Min nTPM: 28.3
Std nTPM: 7.0
Median nTPM: 44.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 75.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 68.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 63.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 59.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 58.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 57.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 57.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 57.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 56.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 56.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 56.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.0
FF:10164-103B2 76 years, female 54.0
Globus pallidus
Scaled Tags Per Million: 61.6
FF:10175-103C4 60 years, female 69.4
FF:10161-103A8 76 years, female 53.8
Nucleus accumbens
Scaled Tags Per Million: 62.1
FF:10037-101F1 23-56 years, mixed 62.1
Putamen
Scaled Tags Per Million: 60.1
FF:10176-103C5 60 years, female 60.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Caudate
nTPM: 11.1
Samples: 4

Max nTPM: 13.9
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 11.7
Sample C Male 13.9
Sample D Male 9.4
Putamen
nTPM: 11.0
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.8
Sample A Female 10.6
Sample B Female 8.8
Sample C Male 12.3
Sample D Male 12.3
Septum
nTPM: 12.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.7
Sample A Female 10.8
Sample B Female 11.9
Sample C Male 15.5
Sample D Male 10.7
Ventral pallidum
nTPM: 12.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 11.4
Sample C Male 17.6
Sample D Male 12.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.7
Samples: 4

Max nTPM: 41.9
Min nTPM: 38.6
Sample A Male 39.3
Sample B Male 41.9
Sample C Female 38.6
Sample D Female 38.8
Septum
nTPM: 39.1
Samples: 4

Max nTPM: 41.4
Min nTPM: 37.0
Sample A Male 41.4
Sample B Male 37.0
Sample C Female 37.5
Sample D Female 40.3
Ventral forebrain
nTPM: 41.5
Samples: 4

Max nTPM: 44.2
Min nTPM: 37.4
Sample A Male 43.1
Sample B Male 41.4
Sample C Female 37.4
Sample D Female 44.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.1
68563080 Antisense, RP_050125_01_A12, Mouse strain C57BL/6J (56 days, male) 5.1
Pallidum
Expression energy: 4.9
68563080 Antisense, RP_050125_01_A12, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.