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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA:35.2 nTPM
GTEx:40.6 nTPM
FANTOM5:50.0 Scaled Tags Per Million
Pig:16.9 nTPM
Mouse:47.5 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
2586 Male, age 75, left hemisphere 43.4
2019 Male, age 18, unknown 38.4
1827 Male, age 72, unknown 35.2
2666 Male, age 74, left hemisphere 33.8
2828 Female, age 72, unknown 33.7
2219 Male, age 76, both hemispheres 32.7
2411 Female, age 72, unknown 32.5
1870 Female, age 42, unknown 30.2
1833 Male, age 53, unknown 30.1
1830 Male, age 51, unknown 29.9
Dorsal raphe nucleus
nTPM: 30.8
1828 Male, age 53, unknown 32.4
2047 Male, age 72, unknown 31.9
2298 Female, age 72, unknown 31.1
2750 Male, age 76, both hemispheres 30.6
2016 Female, age 72, unknown 28.0
Inferior colliculus
nTPM: 31.0
2097 Female, age 72, unknown 31.8
2849 Male, age 72, unknown 30.8
1848 Female, age 42, unknown 30.7
1890 Male, age 53, unknown 30.6
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Pedunculopontine tegmental nucleus
nTPM: 31.3
2334 Male, age 80, both hemispheres 32.6
1921 Female, age 85, both hemispheres 32.3
2338 Male, age 61, both hemispheres 29.0
Periaquaductal grey, anterior
nTPM: 33.9
2502 Female, age 75, unknown 35.7
1795 Male, age 51, unknown 34.0
1947 Male, age 18, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 29.0
1840 Male, age 53, unknown 29.7
2464 Female, age 72, unknown 29.6
1831 Male, age 72, unknown 29.3
2850 Male, age 76, both hemispheres 27.4
Periaquaductal grey, lateral
nTPM: 28.6
2272 Male, age 74, both hemispheres 29.4
2140 Male, age 76, both hemispheres 28.2
2053 Male, age 18, unknown 28.1
Pretectal area
nTPM: 34.7
2007 Male, age 72, unknown 40.7
1816 Male, age 51, unknown 40.4
1817 Female, age 42, unknown 40.4
1944 Female, age 72, unknown 37.6
1815 Male, age 53, unknown 36.0
2407 Male, age 75, both hemispheres 34.6
2667 Female, age 75, unknown 33.9
2316 Male, age 76, right hemisphere 30.0
2825 Male, age 18, unknown 29.3
2224 Female, age 72, unknown 29.2
2273 Male, age 74, both hemispheres 29.0
Red nucleus
nTPM: 33.2
2785 Male, age 18, unknown 37.4
2584 Male, age 75, left hemisphere 36.0
2503 Female, age 72, unknown 34.0
2588 Male, age 74, left hemisphere 33.1
1821 Female, age 72, unknown 32.9
1954 Female, age 42, unknown 32.9
1904 Male, age 53, unknown 32.8
2227 Male, age 72, unknown 32.7
1865 Male, age 51, unknown 32.2
2725 Female, age 75, unknown 32.2
2769 Male, age 72, unknown 32.1
2823 Male, age 76, right hemisphere 30.2
Substantia nigra
nTPM: 35.2
1916 Female, age 42, unknown 43.7
1851 Male, age 51, unknown 38.2
2665 Male, age 74, both hemispheres 37.8
1941 Male, age 53, unknown 37.2
1889 Female, age 72, unknown 36.6
2583 Male, age 75, right hemisphere 33.9
2590 Female, age 75, unknown 32.8
2699 Male, age 18, unknown 32.4
2241 Male, age 72, unknown 30.8
2409 Female, age 72, unknown 29.1
Superior colliculus
nTPM: 33.2
2664 Male, age 75, both hemispheres 36.3
2087 Female, age 72, unknown 36.0
1796 Male, age 53, unknown 35.8
2261 Male, age 18, unknown 35.2
2668 Female, age 75, unknown 34.7
1895 Male, age 76, right hemisphere 32.4
1839 Male, age 51, unknown 30.6
1995 Male, age 72, unknown 30.6
1913 Female, age 42, unknown 30.5
2587 Male, age 74, left hemisphere 30.2
Ventral tegmental area
nTPM: 33.1
2410 Female, age 72, unknown 36.7
1915 Female, age 42, unknown 35.2
2218 Male, age 76, both hemispheres 34.6
1942 Male, age 51, unknown 32.3
2223 Female, age 72, unknown 30.9
2021 Male, age 53, unknown 29.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.6
Samples: 139

Max nTPM: 67.5
Min nTPM: 24.3
Std nTPM: 7.9
Median nTPM: 40.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 67.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 63.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 61.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 58.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 55.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 55.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 53.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 52.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 52.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 52.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.0
FF:10158-103A5 76 years, female 50.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.9
Pig sample Sample description nTPM
Midbrain
nTPM: 15.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 11.4
Sample A Female 15.2
Sample B Female 11.4
Sample C Male 20.4
Sample D Male 13.1
Periaqueductal gray
nTPM: 12.1
Samples: 3

Max nTPM: 14.2
Min nTPM: 10.8
Sample B Female 11.4
Sample C Male 14.2
Sample D Male 10.8
Substantia nigra
nTPM: 15.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 12.9
Sample A Female 16.9
Sample B Female 14.0
Sample C Male 19.3
Sample D Male 12.9
Superior colliculi
nTPM: 17.0
Samples: 4

Max nTPM: 19.0
Min nTPM: 14.9
Sample A Female 15.5
Sample B Female 19.0
Sample C Male 18.4
Sample D Male 14.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 51.7
Min nTPM: 44.9
Sample A Male 48.2
Sample B Male 45.0
Sample C Female 44.9
Sample D Female 51.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
68563080 Antisense, RP_050125_01_A12, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas project is funded
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