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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		49.541
RNA expressioni
Consensus:31.7 nTPM
HPA:31.7 nTPM
GTEx:6.9 nTPM
FANTOM5:177.6 Scaled Tags Per Million
Pig:41.4 nTPM
Mouse:36.2 nTPM
Allen mouse:20.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA077070
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA077070
Hippocampal formation mean intensity 49.541
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 34.632
Molecular layer of the dentate gyrus 38.265
Granular dentate gyrus 34.217
CA1 - oriens layer 29.464
CA1 - pyramidal layer 34.415
CA1 - radiatum layer 33.883
CA2 - oriens layer 29.106
CA2 - pyramidal layer 34.818
CA2 - radiatum layer 23.379
CA3 - oriens layer 39.556
CA3 - pyramidal layer 35.618
CA3 - radiatum layer 45.646
Stratum lucidum 31.379
Lacunosum moleculare 29.595
Subiculum 49.541

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Hippocampus
nTPM: 25.0
2621 Female, age 67, right hemisphere 40.3
2148 Female, age 91, left hemisphere 29.7
1911 Female, age 85, right hemisphere 23.2
2529 Female, age 94, left hemisphere 22.6
1855 Male, age 76, left hemisphere 18.6
1898 Male, age 80, left hemisphere 15.8
Dentate gyrus
nTPM: 24.9
2531 Female, age 67, both hemispheres 46.3
1927 Female, age 91, both hemispheres 33.8
2530 Female, age 94, left hemisphere 27.1
2246 Female, age 85, both hemispheres 16.3
2528 Male, age 74, both hemispheres 13.7
2010 Male, age 76, both hemispheres 12.1
Entorhinal gyrus
nTPM: 29.4
2613 Female, age 94, left hemisphere 50.9
2686 Male, age 75, right hemisphere 45.4
2764 Male, age 80, right hemisphere 26.8
1787 Male, age 76, left hemisphere 22.2
1938 Female, age 85, left hemisphere 19.1
2117 Female, age 91, right hemisphere 12.3
Hippocampus, CA1
nTPM: 23.5
2749 Male, age 80, left hemisphere 36.1
2527 Male, age 74, both hemispheres 24.5
2045 Male, age 76, both hemispheres 20.4
1873 Female, age 85, both hemispheres 19.7
2082 Female, age 91, right hemisphere 16.8
Hippocampus, CA2
nTPM: 16.7
1892 Male, age 76, both hemispheres 23.0
2437 Female, age 94, left hemisphere 20.5
2113 Female, age 91, right hemisphere 18.5
1963 Male, age 80, left hemisphere 15.2
2249 Male, age 74, both hemispheres 13.0
1940 Female, age 85, left hemisphere 9.7
Hippocampus, CA3
nTPM: 31.7
2620 Female, age 94, left hemisphere 61.7
2861 Female, age 67, both hemispheres 60.4
2137 Male, age 80, left hemisphere 38.6
1867 Male, age 76, both hemispheres 16.6
1891 Female, age 85, both hemispheres 8.8
2436 Male, age 74, both hemispheres 4.4
Parahippocampal cortex
nTPM: 23.1
2622 Female, age 67, right hemisphere 47.0
2245 Female, age 91, both hemispheres 38.8
2693 Female, age 94, both hemispheres 28.6
2250 Female, age 67, right hemisphere 22.2
2532 Female, age 72, left hemisphere 18.8
2692 Male, age 74, both hemispheres 17.7
1933 Female, age 85, both hemispheres 17.0
1990 Female, age 91, right hemisphere 15.0
1850 Male, age 80, both hemispheres 14.2
2018 Male, age 76, both hemispheres 12.1
Perirhinal gyrus
nTPM: 21.8
2521 Female, age 94, right hemisphere 24.2
2848 Male, age 76, right hemisphere 22.9
1794 Male, age 80, right hemisphere 22.5
1847 Female, age 91, left hemisphere 22.3
1841 Female, age 85, right hemisphere 17.2
Subiculum
nTPM: 13.8
1901 Male, age 80, both hemispheres 16.1
2619 Male, age 74, both hemispheres 15.9
1977 Female, age 85, both hemispheres 14.1
2438 Female, age 94, left hemisphere 13.0
2729 Female, age 91, right hemisphere 12.8
2042 Male, age 76, both hemispheres 10.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.9
Samples: 197

Max nTPM: 28.6
Min nTPM: 0.4
Std nTPM: 4.7
Median nTPM: 5.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 28.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 26.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 19.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 18.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 17.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 17.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 16.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 16.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 16.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 16.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 15.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 177.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 177.6
FF:10169-103B7 60 years, female 205.0
FF:10153-102I9 76 years, female 150.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 41.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.9
Samples: 4

Max nTPM: 47.9
Min nTPM: 30.2
Sample A Female 46.3
Sample B Female 47.9
Sample C Male 30.2
Sample D Male 31.0
Entorhinal cortex
nTPM: 38.1
Samples: 4

Max nTPM: 43.6
Min nTPM: 32.8
Sample A Female 40.3
Sample B Female 32.8
Sample C Male 43.6
Sample D Male 35.8
Subiculum
nTPM: 36.6
Samples: 4

Max nTPM: 50.0
Min nTPM: 26.9
Sample A Female 50.0
Sample B Female 29.0
Sample C Male 40.4
Sample D Male 26.9
Ventral hippocampus
nTPM: 41.4
Samples: 4

Max nTPM: 53.9
Min nTPM: 27.1
Sample A Female 35.1
Sample B Female 27.1
Sample C Male 53.9
Sample D Male 49.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 36.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.2
Samples: 4

Max nTPM: 39.2
Min nTPM: 33.9
Sample A Male 36.7
Sample B Male 35.0
Sample C Female 33.9
Sample D Female 39.2
Hippocampal formation
nTPM: 36.2
Samples: 4

Max nTPM: 40.2
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 40.2
Sample C Female 38.6
Sample D Female 39.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 20.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.9
81654127 Antisense, RP_081030_02_F07, Mouse strain C57BL/6J (56 days, male) 20.9

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The Human Protein Atlas

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