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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:17.9 nTPM
HPA:17.9 nTPM
GTEx:25.0 nTPM
FANTOM5:13.8 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:22.3 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004170
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.9
Sample id Sample description nTPM
Hippocampus
nTPM: 17.0
2148 Female, age 91, left hemisphere 20.0
1911 Female, age 85, right hemisphere 19.1
2621 Female, age 67, right hemisphere 19.0
1855 Male, age 76, left hemisphere 15.4
2529 Female, age 94, left hemisphere 14.9
1898 Male, age 80, left hemisphere 13.7
Dentate gyrus
nTPM: 16.8
2531 Female, age 67, both hemispheres 21.0
1927 Female, age 91, both hemispheres 17.1
2246 Female, age 85, both hemispheres 16.5
2528 Male, age 74, both hemispheres 16.0
2530 Female, age 94, left hemisphere 15.9
2010 Male, age 76, both hemispheres 14.3
Entorhinal gyrus
nTPM: 16.0
2764 Male, age 80, right hemisphere 17.8
2613 Female, age 94, left hemisphere 17.7
2686 Male, age 75, right hemisphere 15.9
2117 Female, age 91, right hemisphere 15.3
1787 Male, age 76, left hemisphere 15.0
1938 Female, age 85, left hemisphere 14.4
Hippocampus, CA1
nTPM: 17.4
2045 Male, age 76, both hemispheres 18.1
2749 Male, age 80, left hemisphere 17.8
2082 Female, age 91, right hemisphere 17.4
1873 Female, age 85, both hemispheres 16.9
2527 Male, age 74, both hemispheres 16.5
Hippocampus, CA2
nTPM: 15.4
1963 Male, age 80, left hemisphere 17.1
2113 Female, age 91, right hemisphere 17.0
1940 Female, age 85, left hemisphere 15.8
2249 Male, age 74, both hemispheres 15.0
2437 Female, age 94, left hemisphere 13.9
1892 Male, age 76, both hemispheres 13.3
Hippocampus, CA3
nTPM: 17.9
2861 Female, age 67, both hemispheres 23.6
2620 Female, age 94, left hemisphere 19.3
2137 Male, age 80, left hemisphere 18.0
2436 Male, age 74, both hemispheres 16.4
1891 Female, age 85, both hemispheres 15.9
1867 Male, age 76, both hemispheres 13.9
Parahippocampal cortex
nTPM: 16.0
2622 Female, age 67, right hemisphere 19.1
2693 Female, age 94, both hemispheres 18.6
2692 Male, age 74, both hemispheres 17.1
2245 Female, age 91, both hemispheres 17.0
2532 Female, age 72, left hemisphere 16.0
1933 Female, age 85, both hemispheres 15.3
1990 Female, age 91, right hemisphere 14.7
2250 Female, age 67, right hemisphere 14.7
2018 Male, age 76, both hemispheres 14.3
1850 Male, age 80, both hemispheres 12.6
Perirhinal gyrus
nTPM: 14.3
2521 Female, age 94, right hemisphere 15.8
2848 Male, age 76, right hemisphere 15.5
1847 Female, age 91, left hemisphere 14.2
1794 Male, age 80, right hemisphere 13.3
1841 Female, age 85, right hemisphere 12.9
Subiculum
nTPM: 15.3
2729 Female, age 91, right hemisphere 18.1
2619 Male, age 74, both hemispheres 16.6
2042 Male, age 76, both hemispheres 14.7
1977 Female, age 85, both hemispheres 14.3
1901 Male, age 80, both hemispheres 14.2
2438 Female, age 94, left hemisphere 13.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.0
Samples: 197

Max nTPM: 69.9
Min nTPM: 8.8
Std nTPM: 10.0
Median nTPM: 22.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 69.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 53.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 53.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 49.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 48.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 48.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 45.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 45.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 44.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 43.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 43.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.8
FF:10153-102I9 76 years, female 15.2
FF:10169-103B7 60 years, female 12.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.3
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.4
Sample A Female 4.6
Sample B Female 4.3
Sample C Male 4.7
Sample D Male 3.4
Entorhinal cortex
nTPM: 5.8
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.8
Sample A Female 5.1
Sample B Female 5.5
Sample C Male 7.6
Sample D Male 4.8
Subiculum
nTPM: 4.9
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.1
Sample A Female 6.2
Sample B Female 4.6
Sample C Male 4.8
Sample D Male 4.1
Ventral hippocampus
nTPM: 5.0
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.0
Sample A Female 4.3
Sample B Female 4.0
Sample C Male 7.1
Sample D Male 4.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 22.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.8
Samples: 4

Max nTPM: 22.2
Min nTPM: 21.2
Sample A Male 22.2
Sample B Male 22.0
Sample C Female 21.8
Sample D Female 21.2
Hippocampal formation
nTPM: 22.3
Samples: 4

Max nTPM: 22.9
Min nTPM: 21.1
Sample A Male 22.9
Sample B Male 22.3
Sample C Female 21.1
Sample D Female 22.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
77792631 Antisense, RP_070208_04_D04, Mouse strain C57BL/6J (56 days, male) 1.3
386024 Antisense, RP_040804_01_A12, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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