ABOUTMENU
HELP
NEWS
WDTC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.0 nTPM
HPA:21.0 nTPM
GTEx:19.6 nTPM
FANTOM5:48.0 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:20.4 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.0
2586 Male, age 75, left hemisphere 30.4
2666 Male, age 74, left hemisphere 25.0
2828 Female, age 72, unknown 21.9
2019 Male, age 18, unknown 20.0
1830 Male, age 51, unknown 19.9
1870 Female, age 42, unknown 19.5
1833 Male, age 53, unknown 19.4
1827 Male, age 72, unknown 18.8
2219 Male, age 76, both hemispheres 18.7
2411 Female, age 72, unknown 16.6
Dorsal raphe nucleus
nTPM: 17.6
1828 Male, age 53, unknown 21.2
2047 Male, age 72, unknown 18.0
2750 Male, age 76, both hemispheres 17.3
2016 Female, age 72, unknown 15.8
2298 Female, age 72, unknown 15.5
Inferior colliculus
nTPM: 18.7
2849 Male, age 72, unknown 22.0
1848 Female, age 42, unknown 19.6
1890 Male, age 53, unknown 17.9
2097 Female, age 72, unknown 15.2
Median raphe nucleus
nTPM: 17.3
2220 Male, age 76, midline 17.3
Pedunculopontine tegmental nucleus
nTPM: 18.0
2334 Male, age 80, both hemispheres 20.4
2338 Male, age 61, both hemispheres 17.4
1921 Female, age 85, both hemispheres 16.2
Periaquaductal grey, anterior
nTPM: 19.0
2502 Female, age 75, unknown 21.1
1795 Male, age 51, unknown 18.6
1947 Male, age 18, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 17.2
1831 Male, age 72, unknown 18.8
2464 Female, age 72, unknown 17.6
1840 Male, age 53, unknown 16.4
2850 Male, age 76, both hemispheres 16.0
Periaquaductal grey, lateral
nTPM: 15.5
2053 Male, age 18, unknown 16.9
2272 Male, age 74, both hemispheres 15.1
2140 Male, age 76, both hemispheres 14.4
Pretectal area
nTPM: 18.7
1817 Female, age 42, unknown 23.3
1816 Male, age 51, unknown 23.0
2007 Male, age 72, unknown 20.4
2407 Male, age 75, both hemispheres 20.4
1815 Male, age 53, unknown 19.6
1944 Female, age 72, unknown 18.9
2825 Male, age 18, unknown 18.8
2667 Female, age 75, unknown 18.3
2224 Female, age 72, unknown 14.7
2316 Male, age 76, right hemisphere 14.3
2273 Male, age 74, both hemispheres 13.5
Red nucleus
nTPM: 20.3
2584 Male, age 75, left hemisphere 25.8
2588 Male, age 74, left hemisphere 22.8
2785 Male, age 18, unknown 22.8
2769 Male, age 72, unknown 20.1
2227 Male, age 72, unknown 19.9
1821 Female, age 72, unknown 19.7
2503 Female, age 72, unknown 19.7
2823 Male, age 76, right hemisphere 19.6
1954 Female, age 42, unknown 19.2
1865 Male, age 51, unknown 19.1
2725 Female, age 75, unknown 17.8
1904 Male, age 53, unknown 17.2
Substantia nigra
nTPM: 18.5
1941 Male, age 53, unknown 23.7
2583 Male, age 75, right hemisphere 22.4
2665 Male, age 74, both hemispheres 21.5
1889 Female, age 72, unknown 19.0
1916 Female, age 42, unknown 18.6
2590 Female, age 75, unknown 17.8
2699 Male, age 18, unknown 17.6
1851 Male, age 51, unknown 17.2
2241 Male, age 72, unknown 15.2
2409 Female, age 72, unknown 11.6
Superior colliculus
nTPM: 19.5
2664 Male, age 75, both hemispheres 29.4
2668 Female, age 75, unknown 20.1
1839 Male, age 51, unknown 19.8
1895 Male, age 76, right hemisphere 19.3
1913 Female, age 42, unknown 18.4
2087 Female, age 72, unknown 17.9
2261 Male, age 18, unknown 17.9
1796 Male, age 53, unknown 17.4
1995 Male, age 72, unknown 17.4
2587 Male, age 74, left hemisphere 17.2
Ventral tegmental area
nTPM: 17.7
2223 Female, age 72, unknown 21.1
1915 Female, age 42, unknown 18.7
2410 Female, age 72, unknown 17.3
2218 Male, age 76, both hemispheres 17.2
1942 Male, age 51, unknown 16.3
2021 Male, age 53, unknown 15.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.6
Samples: 139

Max nTPM: 36.2
Min nTPM: 8.8
Std nTPM: 3.4
Median nTPM: 19.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 27.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 27.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 27.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 26.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 26.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 24.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.0
FF:10158-103A5 76 years, female 48.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.7
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 23.8
Min nTPM: 20.5
Sample A Female 23.8
Sample B Female 22.2
Sample C Male 20.5
Sample D Male 22.8
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 23.2
Min nTPM: 21.7
Sample B Female 23.2
Sample C Male 22.3
Sample D Male 21.7
Substantia nigra
nTPM: 22.3
Samples: 4

Max nTPM: 23.5
Min nTPM: 20.6
Sample A Female 22.2
Sample B Female 20.6
Sample C Male 22.7
Sample D Male 23.5
Superior colliculi
nTPM: 23.7
Samples: 4

Max nTPM: 25.6
Min nTPM: 21.8
Sample A Female 23.1
Sample B Female 24.2
Sample C Male 21.8
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 20.9
Min nTPM: 20.0
Sample A Male 20.9
Sample B Male 20.2
Sample C Female 20.3
Sample D Female 20.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
68924425 Antisense, RP_050303_02_C12, Mouse strain C57BL/6J (56 days, male) 2.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.