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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.8 nTPM
HPA:7.8 nTPM
GTEx:11.9 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:22.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.3
2411 Female, age 72, unknown 9.0
1830 Male, age 51, unknown 7.9
1870 Female, age 42, unknown 7.9
2019 Male, age 18, unknown 7.7
2219 Male, age 76, both hemispheres 7.6
1833 Male, age 53, unknown 7.4
2586 Male, age 75, left hemisphere 7.1
1827 Male, age 72, unknown 6.4
2828 Female, age 72, unknown 6.2
2666 Male, age 74, left hemisphere 6.0
Dorsal raphe nucleus
nTPM: 6.3
2750 Male, age 76, both hemispheres 7.0
2298 Female, age 72, unknown 6.7
1828 Male, age 53, unknown 6.1
2016 Female, age 72, unknown 5.9
2047 Male, age 72, unknown 5.9
Inferior colliculus
nTPM: 6.3
1848 Female, age 42, unknown 6.5
1890 Male, age 53, unknown 6.5
2097 Female, age 72, unknown 6.5
2849 Male, age 72, unknown 5.5
Median raphe nucleus
nTPM: 6.1
2220 Male, age 76, midline 6.1
Pedunculopontine tegmental nucleus
nTPM: 6.6
1921 Female, age 85, both hemispheres 7.3
2334 Male, age 80, both hemispheres 6.4
2338 Male, age 61, both hemispheres 6.1
Periaquaductal grey, anterior
nTPM: 7.2
2502 Female, age 75, unknown 8.0
1947 Male, age 18, unknown 7.4
1795 Male, age 51, unknown 6.3
Periaquaductal grey, dorsal
nTPM: 6.1
2464 Female, age 72, unknown 6.4
1831 Male, age 72, unknown 6.3
1840 Male, age 53, unknown 6.3
2850 Male, age 76, both hemispheres 5.6
Periaquaductal grey, lateral
nTPM: 6.4
2272 Male, age 74, both hemispheres 7.2
2053 Male, age 18, unknown 6.3
2140 Male, age 76, both hemispheres 5.9
Pretectal area
nTPM: 6.7
2407 Male, age 75, both hemispheres 7.5
2007 Male, age 72, unknown 7.4
1815 Male, age 53, unknown 7.1
2273 Male, age 74, both hemispheres 6.8
2667 Female, age 75, unknown 6.8
1817 Female, age 42, unknown 6.6
1816 Male, age 51, unknown 6.4
2316 Male, age 76, right hemisphere 6.4
1944 Female, age 72, unknown 6.3
2224 Female, age 72, unknown 6.3
2825 Male, age 18, unknown 6.2
Red nucleus
nTPM: 7.8
1865 Male, age 51, unknown 9.5
1904 Male, age 53, unknown 8.5
2227 Male, age 72, unknown 8.5
2785 Male, age 18, unknown 8.4
2769 Male, age 72, unknown 8.1
1821 Female, age 72, unknown 8.0
2823 Male, age 76, right hemisphere 8.0
2503 Female, age 72, unknown 7.6
1954 Female, age 42, unknown 7.5
2588 Male, age 74, left hemisphere 7.5
2584 Male, age 75, left hemisphere 6.8
2725 Female, age 75, unknown 5.3
Substantia nigra
nTPM: 6.8
2583 Male, age 75, right hemisphere 8.1
2590 Female, age 75, unknown 7.6
2409 Female, age 72, unknown 7.4
1851 Male, age 51, unknown 7.2
2241 Male, age 72, unknown 6.8
2699 Male, age 18, unknown 6.7
1941 Male, age 53, unknown 6.3
1889 Female, age 72, unknown 6.2
2665 Male, age 74, both hemispheres 6.2
1916 Female, age 42, unknown 6.0
Superior colliculus
nTPM: 6.9
2087 Female, age 72, unknown 7.9
2668 Female, age 75, unknown 7.9
1913 Female, age 42, unknown 7.7
1995 Male, age 72, unknown 7.2
1796 Male, age 53, unknown 6.8
1839 Male, age 51, unknown 6.6
1895 Male, age 76, right hemisphere 6.5
2261 Male, age 18, unknown 6.5
2587 Male, age 74, left hemisphere 6.1
2664 Male, age 75, both hemispheres 5.6
Ventral tegmental area
nTPM: 7.5
2223 Female, age 72, unknown 9.3
2410 Female, age 72, unknown 9.3
1915 Female, age 42, unknown 7.0
2021 Male, age 53, unknown 6.6
1942 Male, age 51, unknown 6.4
2218 Male, age 76, both hemispheres 6.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 139

Max nTPM: 35.6
Min nTPM: 3.4
Std nTPM: 4.8
Median nTPM: 11.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 27.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 27.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 24.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 21.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 20.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 20.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 19.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 19.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 19.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 18.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.3
FF:10158-103A5 76 years, female 16.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.8
Sample A Female 3.7
Sample B Female 2.8
Sample C Male 3.7
Sample D Male 3.4
Periaqueductal gray
nTPM: 2.7
Samples: 3

Max nTPM: 2.9
Min nTPM: 2.3
Sample B Female 2.9
Sample C Male 2.8
Sample D Male 2.3
Substantia nigra
nTPM: 3.8
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.4
Sample A Female 5.1
Sample B Female 3.7
Sample C Male 3.8
Sample D Male 2.4
Superior colliculi
nTPM: 5.0
Samples: 4

Max nTPM: 7.0
Min nTPM: 3.4
Sample A Female 5.4
Sample B Female 7.0
Sample C Male 4.1
Sample D Male 3.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 24.6
Min nTPM: 18.9
Sample A Male 22.7
Sample B Male 18.9
Sample C Female 23.7
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
72182963 Antisense, RP_051005_02_F07, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.