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PFDN2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:159.4 nTPM
HPA:159.4 nTPM
GTEx:151.4 nTPM
FANTOM5:79.6 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:77.5 nTPM
Allen mouse:4.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028700
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 159.4
Sample id Sample description nTPM
Hippocampus
nTPM: 156.5
1898 Male, age 80, left hemisphere 161.4
2621 Female, age 67, right hemisphere 158.7
2529 Female, age 94, left hemisphere 157.0
1855 Male, age 76, left hemisphere 156.4
1911 Female, age 85, right hemisphere 153.4
2148 Female, age 91, left hemisphere 151.8
Dentate gyrus
nTPM: 154.5
2530 Female, age 94, left hemisphere 164.1
2246 Female, age 85, both hemispheres 156.2
1927 Female, age 91, both hemispheres 156.0
2010 Male, age 76, both hemispheres 154.2
2531 Female, age 67, both hemispheres 153.5
2528 Male, age 74, both hemispheres 143.3
Entorhinal gyrus
nTPM: 158.5
2764 Male, age 80, right hemisphere 162.6
2686 Male, age 75, right hemisphere 162.0
1938 Female, age 85, left hemisphere 159.2
1787 Male, age 76, left hemisphere 157.0
2613 Female, age 94, left hemisphere 155.6
2117 Female, age 91, right hemisphere 154.8
Hippocampus, CA1
nTPM: 154.8
2749 Male, age 80, left hemisphere 162.3
2045 Male, age 76, both hemispheres 157.1
1873 Female, age 85, both hemispheres 153.6
2527 Male, age 74, both hemispheres 150.7
2082 Female, age 91, right hemisphere 150.1
Hippocampus, CA2
nTPM: 155.1
1892 Male, age 76, both hemispheres 163.3
1963 Male, age 80, left hemisphere 162.7
2437 Female, age 94, left hemisphere 153.9
1940 Female, age 85, left hemisphere 152.4
2113 Female, age 91, right hemisphere 149.1
2249 Male, age 74, both hemispheres 149.1
Hippocampus, CA3
nTPM: 154.5
2137 Male, age 80, left hemisphere 160.6
1867 Male, age 76, both hemispheres 160.3
1891 Female, age 85, both hemispheres 157.4
2861 Female, age 67, both hemispheres 152.9
2620 Female, age 94, left hemisphere 149.5
2436 Male, age 74, both hemispheres 145.9
Parahippocampal cortex
nTPM: 157.9
2245 Female, age 91, both hemispheres 163.7
1850 Male, age 80, both hemispheres 163.3
1933 Female, age 85, both hemispheres 161.9
2532 Female, age 72, left hemisphere 160.5
1990 Female, age 91, right hemisphere 156.4
2250 Female, age 67, right hemisphere 155.9
2018 Male, age 76, both hemispheres 155.7
2622 Female, age 67, right hemisphere 155.1
2693 Female, age 94, both hemispheres 154.3
2692 Male, age 74, both hemispheres 151.6
Perirhinal gyrus
nTPM: 159.4
1841 Female, age 85, right hemisphere 163.3
1794 Male, age 80, right hemisphere 160.6
2848 Male, age 76, right hemisphere 159.9
1847 Female, age 91, left hemisphere 159.2
2521 Female, age 94, right hemisphere 154.0
Subiculum
nTPM: 156.8
2042 Male, age 76, both hemispheres 164.1
1901 Male, age 80, both hemispheres 162.1
1977 Female, age 85, both hemispheres 158.1
2438 Female, age 94, left hemisphere 156.2
2619 Male, age 74, both hemispheres 153.3
2729 Female, age 91, right hemisphere 146.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 151.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 151.4
Samples: 197

Max nTPM: 371.9
Min nTPM: 51.3
Std nTPM: 41.3
Median nTPM: 147.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 371.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 333.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 288.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 259.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 251.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 246.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 242.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 229.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 219.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 219.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 219.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.6
FF:10169-103B7 60 years, female 82.6
FF:10153-102I9 76 years, female 76.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.8
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.9
Sample A Female 9.2
Sample B Female 6.9
Sample C Male 8.3
Sample D Male 6.9
Entorhinal cortex
nTPM: 8.0
Samples: 4

Max nTPM: 8.4
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 8.4
Sample C Male 7.9
Sample D Male 7.9
Subiculum
nTPM: 7.7
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.9
Sample A Female 9.3
Sample B Female 7.3
Sample C Male 7.3
Sample D Male 6.9
Ventral hippocampus
nTPM: 7.4
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.7
Sample A Female 6.9
Sample B Female 6.8
Sample C Male 9.0
Sample D Male 6.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 77.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 77.5
Samples: 4

Max nTPM: 80.8
Min nTPM: 75.9
Sample A Male 76.0
Sample B Male 77.4
Sample C Female 75.9
Sample D Female 80.8
Hippocampal formation
nTPM: 73.0
Samples: 4

Max nTPM: 84.7
Min nTPM: 66.8
Sample A Male 84.7
Sample B Male 68.2
Sample C Female 72.1
Sample D Female 66.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.8
68666601 Antisense, RP_050126_02_E12, Mouse strain C57BL/6J (56 days, male) 4.8

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