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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:45.2 nTPM
HPA:45.2 nTPM
GTEx:34.1 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:34.0 nTPM
Allen mouse:8.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019463Antibody HPA019481Antibody CAB017151
Glial cells Not detectedMediumMedium
Neuronal cells Not detectedNot detectedMedium






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.2
1781 Male, age 74, unknown 45.1
2481 Female, age 94, left hemisphere 44.8
2846 Female, age 79, unknown 43.8
2288 Male, age 75, left hemisphere 43.1
1857 Female, age 85, left hemisphere 42.8
2290 Female, age 72, unknown 42.5
1854 Male, age 80, left hemisphere 41.9
2289 Male, age 61, right hemisphere 41.5
Claustrum
nTPM: 45.2
2292 Female, age 85, both hemispheres 46.5
2645 Female, age 72, unknown 46.4
2284 Female, age 91, both hemispheres 46.1
2568 Male, age 61, both hemispheres 45.8
2196 Female, age 79, unknown 45.4
2198 Male, age 80, both hemispheres 45.3
1956 Male, age 74, unknown 45.1
2491 Male, age 75, both hemispheres 43.3
2392 Female, age 94, both hemispheres 42.7
Globus pallidus, externus
nTPM: 42.1
2395 Male, age 75, both hemispheres 42.9
2772 Female, age 79, unknown 42.9
2567 Female, age 72, unknown 42.1
1996 Male, age 80, right hemisphere 41.7
2646 Male, age 61, right hemisphere 40.8
Globus pallidus, internus
nTPM: 42.6
2287 Male, age 75, right hemisphere 43.6
2778 Female, age 91, both hemispheres 43.5
2483 Female, age 94, right hemisphere 43.4
2111 Female, age 85, right hemisphere 43.2
1818 Male, age 74, unknown 41.9
2566 Female, age 72, unknown 41.9
2037 Male, age 80, right hemisphere 40.6
Nucleus accumbens
nTPM: 43.3
1783 Male, age 74, unknown 44.8
1806 Female, age 85, left hemisphere 44.2
2286 Male, age 75, left hemisphere 43.9
2824 Male, age 61, right hemisphere 43.6
2391 Female, age 94, left hemisphere 43.2
1856 Female, age 91, right hemisphere 43.1
2698 Female, age 72, unknown 42.6
2732 Male, age 80, right hemisphere 40.7
Nucleus basalis of Meynert
nTPM: 41.0
2821 Male, age 75, both hemispheres 41.8
2569 Male, age 61, both hemispheres 40.9
2393 Male, age 80, right hemisphere 40.7
2484 Female, age 94, left hemisphere 40.6
Nucleus of the diagonal band
nTPM: 44.6
2029 Male, age 61, right hemisphere 45.4
2775 Male, age 80, right hemisphere 45.1
1812 Female, age 91, both hemispheres 44.8
2195 Female, age 85, both hemispheres 44.0
1979 Male, age 74, unknown 43.5
Olfactory tubercle
nTPM: 44.1
1998 Female, age 91, both hemispheres 45.0
2487 Female, age 94, left hemisphere 44.0
2856 Male, age 75, right hemisphere 43.8
1846 Male, age 80, right hemisphere 43.6
Putamen
nTPM: 43.3
2647 Male, age 75, left hemisphere 45.1
2482 Female, age 94, left hemisphere 44.1
1838 Male, age 80, right hemisphere 43.6
1829 Male, age 74, unknown 43.2
1937 Female, age 91, right hemisphere 43.0
2466 Female, age 79, unknown 43.0
2489 Female, age 72, unknown 41.3
Septal nuclei
nTPM: 43.3
1960 Male, age 74, unknown 46.7
2031 Female, age 72, unknown 45.1
2629 Female, age 94, right hemisphere 44.6
2059 Female, age 85, both hemispheres 43.5
2009 Female, age 91, both hemispheres 43.1
2199 Male, age 80, right hemisphere 40.5
2394 Male, age 61, left hemisphere 39.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.7
Samples: 246

Max nTPM: 46.9
Min nTPM: 19.5
Std nTPM: 4.8
Median nTPM: 31.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 46.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 45.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 44.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 44.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 44.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 44.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 43.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 42.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 41.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 41.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 40.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.5
Samples: 246

Max nTPM: 61.6
Min nTPM: 21.7
Std nTPM: 5.9
Median nTPM: 32.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 61.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 54.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 53.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 52.8
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 51.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 48.5
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 47.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 45.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 44.5
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 44.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 44.2
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Brain - Putamen (basal ganglia)
Average nTPM: 34.1
Samples: 205

Max nTPM: 52.0
Min nTPM: 20.0
Std nTPM: 5.7
Median nTPM: 33.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 52.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 51.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 50.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 49.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 49.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 48.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 48.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 45.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 44.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 44.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 44.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.0
FF:10164-103B2 76 years, female 48.0
Globus pallidus
Scaled Tags Per Million: 41.1
FF:10161-103A8 76 years, female 42.8
FF:10175-103C4 60 years, female 39.4
Nucleus accumbens
Scaled Tags Per Million: 68.5
FF:10037-101F1 23-56 years, mixed 68.5
Putamen
Scaled Tags Per Million: 60.1
FF:10176-103C5 60 years, female 60.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Caudate
nTPM: 26.7
Samples: 4

Max nTPM: 30.8
Min nTPM: 23.5
Sample A Female 23.5
Sample B Female 28.6
Sample C Male 30.8
Sample D Male 23.9
Putamen
nTPM: 28.4
Samples: 4

Max nTPM: 32.3
Min nTPM: 22.4
Sample A Female 27.4
Sample B Female 22.4
Sample C Male 31.6
Sample D Male 32.3
Septum
nTPM: 26.8
Samples: 4

Max nTPM: 28.0
Min nTPM: 25.2
Sample A Female 26.0
Sample B Female 25.2
Sample C Male 28.0
Sample D Male 27.9
Ventral pallidum
nTPM: 28.3
Samples: 4

Max nTPM: 32.0
Min nTPM: 23.2
Sample A Female 23.2
Sample B Female 29.3
Sample C Male 32.0
Sample D Male 28.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 34.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.6
Samples: 4

Max nTPM: 33.1
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 33.0
Sample C Female 32.8
Sample D Female 33.1
Septum
nTPM: 31.0
Samples: 4

Max nTPM: 32.5
Min nTPM: 30.1
Sample A Male 31.0
Sample B Male 30.4
Sample C Female 30.1
Sample D Female 32.5
Ventral forebrain
nTPM: 34.1
Samples: 4

Max nTPM: 35.4
Min nTPM: 31.3
Sample A Male 35.2
Sample B Male 31.3
Sample C Female 34.3
Sample D Female 35.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.2
68799143 Antisense, RP_050217_02_B05, Mouse strain C57BL/6J (56 days, male) 8.2
Pallidum
Expression energy: 7.9
68799143 Antisense, RP_050217_02_B05, Mouse strain C57BL/6J (56 days, male) 7.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.