ABOUTMENU
HELP
NEWS
ITPKB
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:188.0 nTPM
HPA:188.0 nTPM
GTEx:110.0 nTPM
FANTOM5:329.0 Scaled Tags Per Million
Pig:66.3 nTPM
Mouse:33.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 188.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 161.5
2828 Female, age 72, unknown 227.3
2586 Male, age 75, left hemisphere 198.1
1870 Female, age 42, unknown 169.2
2666 Male, age 74, left hemisphere 166.5
1833 Male, age 53, unknown 160.5
2411 Female, age 72, unknown 158.1
1830 Male, age 51, unknown 156.8
2019 Male, age 18, unknown 151.9
1827 Male, age 72, unknown 145.2
2219 Male, age 76, both hemispheres 81.4
Dorsal raphe nucleus
nTPM: 154.0
2016 Female, age 72, unknown 184.3
1828 Male, age 53, unknown 172.9
2047 Male, age 72, unknown 155.1
2298 Female, age 72, unknown 145.3
2750 Male, age 76, both hemispheres 112.4
Inferior colliculus
nTPM: 158.9
1848 Female, age 42, unknown 168.5
1890 Male, age 53, unknown 163.2
2849 Male, age 72, unknown 157.6
2097 Female, age 72, unknown 146.4
Median raphe nucleus
nTPM: 104.0
2220 Male, age 76, midline 104.0
Pedunculopontine tegmental nucleus
nTPM: 118.5
2338 Male, age 61, both hemispheres 122.3
1921 Female, age 85, both hemispheres 117.9
2334 Male, age 80, both hemispheres 115.4
Periaquaductal grey, anterior
nTPM: 142.1
2502 Female, age 75, unknown 151.3
1947 Male, age 18, unknown 139.2
1795 Male, age 51, unknown 135.8
Periaquaductal grey, dorsal
nTPM: 162.5
2850 Male, age 76, both hemispheres 192.8
2464 Female, age 72, unknown 176.1
1840 Male, age 53, unknown 151.3
1831 Male, age 72, unknown 130.0
Periaquaductal grey, lateral
nTPM: 164.5
2140 Male, age 76, both hemispheres 197.1
2053 Male, age 18, unknown 168.9
2272 Male, age 74, both hemispheres 127.6
Pretectal area
nTPM: 134.8
2316 Male, age 76, right hemisphere 162.5
2825 Male, age 18, unknown 153.0
1817 Female, age 42, unknown 138.8
2407 Male, age 75, both hemispheres 137.6
1815 Male, age 53, unknown 136.5
2667 Female, age 75, unknown 134.0
1944 Female, age 72, unknown 131.8
2273 Male, age 74, both hemispheres 128.7
2224 Female, age 72, unknown 124.3
1816 Male, age 51, unknown 118.9
2007 Male, age 72, unknown 116.9
Red nucleus
nTPM: 188.0
1954 Female, age 42, unknown 223.6
2503 Female, age 72, unknown 218.0
2769 Male, age 72, unknown 208.2
2227 Male, age 72, unknown 205.1
1821 Female, age 72, unknown 202.3
1865 Male, age 51, unknown 194.4
1904 Male, age 53, unknown 187.9
2588 Male, age 74, left hemisphere 182.9
2725 Female, age 75, unknown 176.8
2785 Male, age 18, unknown 164.0
2823 Male, age 76, right hemisphere 159.7
2584 Male, age 75, left hemisphere 133.4
Substantia nigra
nTPM: 158.7
2409 Female, age 72, unknown 191.1
2699 Male, age 18, unknown 181.3
1916 Female, age 42, unknown 175.9
1851 Male, age 51, unknown 169.1
2590 Female, age 75, unknown 161.9
2583 Male, age 75, right hemisphere 149.2
2241 Male, age 72, unknown 148.6
1889 Female, age 72, unknown 138.3
2665 Male, age 74, both hemispheres 137.5
1941 Male, age 53, unknown 134.1
Superior colliculus
nTPM: 149.2
1995 Male, age 72, unknown 192.6
2664 Male, age 75, both hemispheres 184.5
1913 Female, age 42, unknown 156.3
1839 Male, age 51, unknown 150.1
1796 Male, age 53, unknown 148.9
2668 Female, age 75, unknown 141.1
2087 Female, age 72, unknown 136.5
2587 Male, age 74, left hemisphere 133.9
2261 Male, age 18, unknown 127.3
1895 Male, age 76, right hemisphere 120.4
Ventral tegmental area
nTPM: 147.1
2410 Female, age 72, unknown 176.4
1915 Female, age 42, unknown 162.0
1942 Male, age 51, unknown 150.2
2021 Male, age 53, unknown 144.4
2223 Female, age 72, unknown 133.3
2218 Male, age 76, both hemispheres 116.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 110.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.0
Samples: 139

Max nTPM: 358.1
Min nTPM: 20.1
Std nTPM: 55.6
Median nTPM: 97.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 358.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 301.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 282.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 262.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 254.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 254.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 237.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 234.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 212.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 205.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 205.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 329.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 329.0
FF:10158-103A5 76 years, female 329.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.3
Pig sample Sample description nTPM
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 124.9
Min nTPM: 33.3
Sample A Female 124.9
Sample B Female 48.1
Sample C Male 48.6
Sample D Male 33.3
Periaqueductal gray
nTPM: 66.3
Samples: 3

Max nTPM: 72.3
Min nTPM: 62.9
Sample B Female 62.9
Sample C Male 72.3
Sample D Male 63.7
Substantia nigra
nTPM: 57.2
Samples: 4

Max nTPM: 65.6
Min nTPM: 50.3
Sample A Female 65.6
Sample B Female 51.7
Sample C Male 61.2
Sample D Male 50.3
Superior colliculi
nTPM: 46.4
Samples: 4

Max nTPM: 52.0
Min nTPM: 41.5
Sample A Female 52.0
Sample B Female 41.5
Sample C Male 45.5
Sample D Male 46.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.3
Samples: 4

Max nTPM: 35.6
Min nTPM: 30.2
Sample A Male 35.6
Sample B Male 32.9
Sample C Female 30.2
Sample D Female 34.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69735640 Antisense, RP_050503_03_B11, Mouse strain C57BL/6J (56 days, male) 0.6
73520992 Antisense, RP_051101_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.