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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:315.0 nTPM
HPA:315.0 nTPM
GTEx:354.1 nTPM
FANTOM5:493.9 Scaled Tags Per Million
Pig:157.0 nTPM
Mouse:131.7 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 315.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 291.8
2586 Male, age 75, left hemisphere 488.6
1833 Male, age 53, unknown 309.5
1830 Male, age 51, unknown 294.9
1870 Female, age 42, unknown 288.8
2828 Female, age 72, unknown 281.8
2411 Female, age 72, unknown 276.5
2019 Male, age 18, unknown 275.9
2666 Male, age 74, left hemisphere 264.8
1827 Male, age 72, unknown 242.4
2219 Male, age 76, both hemispheres 194.9
Dorsal raphe nucleus
nTPM: 251.0
2016 Female, age 72, unknown 267.0
2750 Male, age 76, both hemispheres 262.7
1828 Male, age 53, unknown 254.1
2298 Female, age 72, unknown 252.6
2047 Male, age 72, unknown 218.6
Inferior colliculus
nTPM: 246.2
1848 Female, age 42, unknown 276.7
2849 Male, age 72, unknown 248.4
1890 Male, age 53, unknown 240.7
2097 Female, age 72, unknown 219.1
Median raphe nucleus
nTPM: 246.7
2220 Male, age 76, midline 246.7
Pedunculopontine tegmental nucleus
nTPM: 244.0
2334 Male, age 80, both hemispheres 268.3
1921 Female, age 85, both hemispheres 248.8
2338 Male, age 61, both hemispheres 215.0
Periaquaductal grey, anterior
nTPM: 271.6
2502 Female, age 75, unknown 302.3
1795 Male, age 51, unknown 260.7
1947 Male, age 18, unknown 251.7
Periaquaductal grey, dorsal
nTPM: 242.9
2850 Male, age 76, both hemispheres 292.3
2464 Female, age 72, unknown 247.6
1840 Male, age 53, unknown 216.1
1831 Male, age 72, unknown 215.8
Periaquaductal grey, lateral
nTPM: 263.5
2140 Male, age 76, both hemispheres 312.0
2272 Male, age 74, both hemispheres 245.9
2053 Male, age 18, unknown 232.5
Pretectal area
nTPM: 254.8
2316 Male, age 76, right hemisphere 277.0
1817 Female, age 42, unknown 274.4
2007 Male, age 72, unknown 274.3
1815 Male, age 53, unknown 268.2
2224 Female, age 72, unknown 256.5
2273 Male, age 74, both hemispheres 255.0
2667 Female, age 75, unknown 249.4
2825 Male, age 18, unknown 243.9
1944 Female, age 72, unknown 239.0
2407 Male, age 75, both hemispheres 238.8
1816 Male, age 51, unknown 226.7
Red nucleus
nTPM: 315.0
2227 Male, age 72, unknown 372.7
1904 Male, age 53, unknown 370.2
2769 Male, age 72, unknown 368.6
1865 Male, age 51, unknown 348.7
1954 Female, age 42, unknown 347.1
2785 Male, age 18, unknown 323.7
1821 Female, age 72, unknown 320.8
2503 Female, age 72, unknown 298.2
2588 Male, age 74, left hemisphere 280.7
2584 Male, age 75, left hemisphere 257.7
2725 Female, age 75, unknown 247.1
2823 Male, age 76, right hemisphere 245.1
Substantia nigra
nTPM: 248.4
2583 Male, age 75, right hemisphere 299.5
2699 Male, age 18, unknown 284.3
2590 Female, age 75, unknown 274.1
1851 Male, age 51, unknown 263.1
1889 Female, age 72, unknown 254.1
1916 Female, age 42, unknown 253.1
2665 Male, age 74, both hemispheres 226.4
2409 Female, age 72, unknown 225.6
2241 Male, age 72, unknown 203.7
1941 Male, age 53, unknown 200.4
Superior colliculus
nTPM: 262.4
1995 Male, age 72, unknown 310.5
1913 Female, age 42, unknown 283.0
2664 Male, age 75, both hemispheres 280.4
2261 Male, age 18, unknown 280.2
1796 Male, age 53, unknown 270.1
2668 Female, age 75, unknown 267.9
1839 Male, age 51, unknown 258.7
2087 Female, age 72, unknown 246.0
2587 Male, age 74, left hemisphere 227.4
1895 Male, age 76, right hemisphere 199.3
Ventral tegmental area
nTPM: 256.7
2223 Female, age 72, unknown 279.0
2218 Male, age 76, both hemispheres 264.0
2410 Female, age 72, unknown 263.0
2021 Male, age 53, unknown 251.4
1942 Male, age 51, unknown 241.9
1915 Female, age 42, unknown 240.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 354.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 354.1
Samples: 139

Max nTPM: 883.7
Min nTPM: 118.3
Std nTPM: 114.8
Median nTPM: 345.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 883.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 652.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 611.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 609.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 592.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 574.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 557.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 547.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 546.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 537.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 534.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 493.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 493.9
FF:10158-103A5 76 years, female 493.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 157.0
Pig sample Sample description nTPM
Midbrain
nTPM: 156.5
Samples: 4

Max nTPM: 215.3
Min nTPM: 92.6
Sample A Female 211.5
Sample B Female 106.5
Sample C Male 215.3
Sample D Male 92.6
Periaqueductal gray
nTPM: 91.2
Samples: 3

Max nTPM: 95.8
Min nTPM: 84.3
Sample B Female 95.8
Sample C Male 93.6
Sample D Male 84.3
Substantia nigra
nTPM: 133.2
Samples: 4

Max nTPM: 151.2
Min nTPM: 114.2
Sample A Female 151.2
Sample B Female 123.9
Sample C Male 114.2
Sample D Male 143.4
Superior colliculi
nTPM: 157.0
Samples: 4

Max nTPM: 187.5
Min nTPM: 137.4
Sample A Female 157.8
Sample B Female 137.4
Sample C Male 187.5
Sample D Male 145.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 131.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.7
Samples: 4

Max nTPM: 139.3
Min nTPM: 120.7
Sample A Male 139.1
Sample B Male 120.7
Sample C Female 127.7
Sample D Female 139.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
70429393 Antisense, RP_050614_01_E12, Mouse strain C57BL/6J (56 days, male) 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.