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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:45.5 nTPM
HPA:45.5 nTPM
GTEx:32.8 nTPM
FANTOM5:128.1 Scaled Tags Per Million
Pig:88.0 nTPM
Mouse:102.6 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA015473
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.9
2481 Female, age 94, left hemisphere 50.0
1857 Female, age 85, left hemisphere 48.0
1854 Male, age 80, left hemisphere 46.8
2290 Female, age 72, unknown 45.5
2288 Male, age 75, left hemisphere 37.7
2289 Male, age 61, right hemisphere 37.1
1781 Male, age 74, unknown 35.1
2846 Female, age 79, unknown 35.1
Claustrum
nTPM: 36.9
2645 Female, age 72, unknown 41.7
2491 Male, age 75, both hemispheres 40.7
2568 Male, age 61, both hemispheres 40.5
2284 Female, age 91, both hemispheres 40.3
2198 Male, age 80, both hemispheres 36.4
2196 Female, age 79, unknown 34.5
2392 Female, age 94, both hemispheres 34.0
1956 Male, age 74, unknown 33.0
2292 Female, age 85, both hemispheres 31.1
Globus pallidus, externus
nTPM: 45.5
2567 Female, age 72, unknown 54.8
2646 Male, age 61, right hemisphere 49.6
1996 Male, age 80, right hemisphere 47.5
2772 Female, age 79, unknown 41.3
2395 Male, age 75, both hemispheres 34.5
Globus pallidus, internus
nTPM: 41.0
2483 Female, age 94, right hemisphere 48.5
1818 Male, age 74, unknown 43.5
2037 Male, age 80, right hemisphere 43.5
2566 Female, age 72, unknown 42.5
2111 Female, age 85, right hemisphere 39.1
2287 Male, age 75, right hemisphere 36.5
2778 Female, age 91, both hemispheres 33.6
Nucleus accumbens
nTPM: 38.8
1806 Female, age 85, left hemisphere 48.4
2286 Male, age 75, left hemisphere 41.3
1783 Male, age 74, unknown 40.9
2732 Male, age 80, right hemisphere 40.7
2391 Female, age 94, left hemisphere 37.0
2698 Female, age 72, unknown 36.3
1856 Female, age 91, right hemisphere 35.3
2824 Male, age 61, right hemisphere 30.5
Nucleus basalis of Meynert
nTPM: 42.0
2569 Male, age 61, both hemispheres 56.1
2484 Female, age 94, left hemisphere 41.5
2393 Male, age 80, right hemisphere 39.1
2821 Male, age 75, both hemispheres 31.4
Nucleus of the diagonal band
nTPM: 40.1
2775 Male, age 80, right hemisphere 42.8
1979 Male, age 74, unknown 42.4
2195 Female, age 85, both hemispheres 40.3
2029 Male, age 61, right hemisphere 37.8
1812 Female, age 91, both hemispheres 37.3
Olfactory tubercle
nTPM: 42.1
2856 Male, age 75, right hemisphere 46.0
1846 Male, age 80, right hemisphere 45.0
2487 Female, age 94, left hemisphere 39.4
1998 Female, age 91, both hemispheres 37.9
Putamen
nTPM: 40.3
2647 Male, age 75, left hemisphere 54.0
2482 Female, age 94, left hemisphere 41.3
2489 Female, age 72, unknown 40.4
1829 Male, age 74, unknown 38.5
1838 Male, age 80, right hemisphere 38.3
1937 Female, age 91, right hemisphere 36.3
2466 Female, age 79, unknown 33.6
Septal nuclei
nTPM: 41.5
2059 Female, age 85, both hemispheres 53.0
1960 Male, age 74, unknown 43.5
2394 Male, age 61, left hemisphere 43.4
2199 Male, age 80, right hemisphere 41.3
2031 Female, age 72, unknown 38.7
2009 Female, age 91, both hemispheres 36.9
2629 Female, age 94, right hemisphere 33.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.8
Samples: 246

Max nTPM: 103.6
Min nTPM: 4.4
Std nTPM: 13.6
Median nTPM: 31.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 103.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 75.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 70.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 67.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 63.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 63.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 63.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 57.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 57.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 55.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 55.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.7
Samples: 246

Max nTPM: 92.2
Min nTPM: 2.6
Std nTPM: 15.0
Median nTPM: 30.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 92.2
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 75.8
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 75.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 73.6
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 73.5
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 71.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 71.0
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 69.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 69.5
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 66.8
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 66.4
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Brain - Putamen (basal ganglia)
Average nTPM: 29.8
Samples: 205

Max nTPM: 69.8
Min nTPM: 1.6
Std nTPM: 13.3
Median nTPM: 28.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 69.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 69.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 68.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 68.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 60.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 60.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 58.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 57.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 56.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 55.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 55.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 128.1
FF:10164-103B2 76 years, female 128.1
Globus pallidus
Scaled Tags Per Million: 95.9
FF:10175-103C4 60 years, female 113.6
FF:10161-103A8 76 years, female 78.2
Nucleus accumbens
Scaled Tags Per Million: 120.9
FF:10037-101F1 23-56 years, mixed 120.9
Putamen
Scaled Tags Per Million: 118.5
FF:10176-103C5 60 years, female 118.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 88.0
Pig sample Sample description nTPM
Caudate
nTPM: 88.0
Samples: 4

Max nTPM: 112.8
Min nTPM: 70.1
Sample A Female 70.1
Sample B Female 90.1
Sample C Male 112.8
Sample D Male 79.1
Putamen
nTPM: 84.2
Samples: 4

Max nTPM: 114.2
Min nTPM: 47.3
Sample A Female 47.3
Sample B Female 78.6
Sample C Male 114.2
Sample D Male 96.8
Septum
nTPM: 62.4
Samples: 4

Max nTPM: 75.8
Min nTPM: 32.3
Sample A Female 75.8
Sample B Female 73.1
Sample C Male 32.3
Sample D Male 68.2
Ventral pallidum
nTPM: 71.1
Samples: 4

Max nTPM: 90.8
Min nTPM: 50.0
Sample A Female 90.8
Sample B Female 73.8
Sample C Male 50.0
Sample D Male 69.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 102.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.4
Samples: 4

Max nTPM: 106.4
Min nTPM: 95.3
Sample A Male 99.7
Sample B Male 104.2
Sample C Female 95.3
Sample D Female 106.4
Septum
nTPM: 102.6
Samples: 4

Max nTPM: 108.8
Min nTPM: 96.8
Sample A Male 100.6
Sample B Male 108.8
Sample C Female 96.8
Sample D Female 104.2
Ventral forebrain
nTPM: 96.6
Samples: 4

Max nTPM: 99.2
Min nTPM: 91.8
Sample A Male 99.2
Sample B Male 98.2
Sample C Female 91.8
Sample D Female 97.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
70302051 Antisense, RP_050607_03_D12, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.6
70302051 Antisense, RP_050607_03_D12, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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