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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA:26.5 nTPM
GTEx:25.2 nTPM
FANTOM5:16.5 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:22.7 nTPM
Allen mouse:5.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA057934
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.5
Sample id Sample description nTPM
Hippocampus
nTPM: 18.3
2148 Female, age 91, left hemisphere 25.6
2529 Female, age 94, left hemisphere 19.6
1855 Male, age 76, left hemisphere 17.9
2621 Female, age 67, right hemisphere 16.2
1911 Female, age 85, right hemisphere 16.0
1898 Male, age 80, left hemisphere 14.4
Dentate gyrus
nTPM: 17.6
2531 Female, age 67, both hemispheres 33.0
1927 Female, age 91, both hemispheres 17.4
2010 Male, age 76, both hemispheres 17.0
2246 Female, age 85, both hemispheres 16.2
2528 Male, age 74, both hemispheres 12.2
2530 Female, age 94, left hemisphere 9.9
Entorhinal gyrus
nTPM: 9.8
2686 Male, age 75, right hemisphere 12.0
1787 Male, age 76, left hemisphere 10.8
2117 Female, age 91, right hemisphere 10.4
1938 Female, age 85, left hemisphere 9.0
2613 Female, age 94, left hemisphere 9.0
2764 Male, age 80, right hemisphere 7.5
Hippocampus, CA1
nTPM: 22.4
2045 Male, age 76, both hemispheres 47.8
2749 Male, age 80, left hemisphere 17.7
1873 Female, age 85, both hemispheres 16.2
2082 Female, age 91, right hemisphere 15.5
2527 Male, age 74, both hemispheres 15.0
Hippocampus, CA2
nTPM: 10.6
2113 Female, age 91, right hemisphere 15.2
1892 Male, age 76, both hemispheres 12.5
2249 Male, age 74, both hemispheres 10.5
1940 Female, age 85, left hemisphere 9.8
2437 Female, age 94, left hemisphere 8.9
1963 Male, age 80, left hemisphere 6.4
Hippocampus, CA3
nTPM: 26.5
2620 Female, age 94, left hemisphere 62.3
2861 Female, age 67, both hemispheres 29.1
2137 Male, age 80, left hemisphere 23.5
1867 Male, age 76, both hemispheres 20.4
1891 Female, age 85, both hemispheres 14.9
2436 Male, age 74, both hemispheres 8.9
Parahippocampal cortex
nTPM: 11.2
2245 Female, age 91, both hemispheres 19.7
2018 Male, age 76, both hemispheres 15.0
2250 Female, age 67, right hemisphere 13.9
2622 Female, age 67, right hemisphere 11.9
1933 Female, age 85, both hemispheres 9.9
2532 Female, age 72, left hemisphere 9.8
2693 Female, age 94, both hemispheres 9.1
2692 Male, age 74, both hemispheres 8.6
1850 Male, age 80, both hemispheres 7.3
1990 Female, age 91, right hemisphere 6.7
Perirhinal gyrus
nTPM: 9.9
1794 Male, age 80, right hemisphere 11.6
2521 Female, age 94, right hemisphere 10.0
1841 Female, age 85, right hemisphere 9.9
2848 Male, age 76, right hemisphere 9.3
1847 Female, age 91, left hemisphere 8.8
Subiculum
nTPM: 13.8
2729 Female, age 91, right hemisphere 26.7
1901 Male, age 80, both hemispheres 15.5
2042 Male, age 76, both hemispheres 13.5
2438 Female, age 94, left hemisphere 9.5
1977 Female, age 85, both hemispheres 9.3
2619 Male, age 74, both hemispheres 8.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.2
Samples: 197

Max nTPM: 121.8
Min nTPM: 1.8
Std nTPM: 19.2
Median nTPM: 19.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 121.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 105.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 93.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 86.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 85.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 82.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 74.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 74.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 66.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 64.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 63.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.5
FF:10169-103B7 60 years, female 18.8
FF:10153-102I9 76 years, female 14.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 8.1
Samples: 4

Max nTPM: 10.2
Min nTPM: 5.2
Sample A Female 9.1
Sample B Female 10.2
Sample C Male 5.2
Sample D Male 7.7
Entorhinal cortex
nTPM: 2.2
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.2
Sample A Female 2.7
Sample B Female 2.6
Sample C Male 2.4
Sample D Male 1.2
Subiculum
nTPM: 3.5
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.1
Sample A Female 3.7
Sample B Female 3.9
Sample C Male 3.3
Sample D Male 3.1
Ventral hippocampus
nTPM: 8.5
Samples: 4

Max nTPM: 11.1
Min nTPM: 4.4
Sample A Female 8.1
Sample B Female 10.2
Sample C Male 11.1
Sample D Male 4.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 22.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.8
Samples: 4

Max nTPM: 12.7
Min nTPM: 2.5
Sample A Male 9.1
Sample B Male 2.5
Sample C Female 12.7
Sample D Female 2.9
Hippocampal formation
nTPM: 22.7
Samples: 4

Max nTPM: 29.4
Min nTPM: 16.0
Sample A Male 16.0
Sample B Male 29.4
Sample C Female 21.3
Sample D Female 24.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.8
68845789 Antisense, RP_050224_02_E07, Mouse strain C57BL/6J (56 days, male) 7.2
71587929 Antisense, RP_050725_03_G06, Mouse strain C57BL/6J (56 days, male) 4.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.