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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:10.6 nTPM
HPA:10.6 nTPM
GTEx:10.9 nTPM
FANTOM5:33.5 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:15.1 nTPM
Allen mouse:8.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035796Antibody HPA035797
Glial cells LowNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 10.6
Sample id Sample description nTPM
Hippocampus
nTPM: 10.2
2148 Female, age 91, left hemisphere 11.7
2621 Female, age 67, right hemisphere 10.6
1911 Female, age 85, right hemisphere 10.4
2529 Female, age 94, left hemisphere 10.4
1855 Male, age 76, left hemisphere 9.4
1898 Male, age 80, left hemisphere 8.7
Dentate gyrus
nTPM: 10.4
2531 Female, age 67, both hemispheres 12.0
1927 Female, age 91, both hemispheres 11.3
2246 Female, age 85, both hemispheres 10.2
2010 Male, age 76, both hemispheres 9.8
2530 Female, age 94, left hemisphere 9.7
2528 Male, age 74, both hemispheres 9.4
Entorhinal gyrus
nTPM: 10.6
2686 Male, age 75, right hemisphere 12.0
2613 Female, age 94, left hemisphere 11.1
2117 Female, age 91, right hemisphere 10.3
2764 Male, age 80, right hemisphere 10.3
1787 Male, age 76, left hemisphere 10.0
1938 Female, age 85, left hemisphere 9.9
Hippocampus, CA1
nTPM: 10.1
1873 Female, age 85, both hemispheres 11.4
2749 Male, age 80, left hemisphere 10.6
2527 Male, age 74, both hemispheres 10.1
2045 Male, age 76, both hemispheres 9.4
2082 Female, age 91, right hemisphere 9.1
Hippocampus, CA2
nTPM: 10.2
1963 Male, age 80, left hemisphere 11.7
1892 Male, age 76, both hemispheres 11.5
2437 Female, age 94, left hemisphere 10.3
2113 Female, age 91, right hemisphere 10.0
2249 Male, age 74, both hemispheres 9.0
1940 Female, age 85, left hemisphere 8.7
Hippocampus, CA3
nTPM: 10.3
2620 Female, age 94, left hemisphere 12.1
2861 Female, age 67, both hemispheres 11.1
2137 Male, age 80, left hemisphere 10.6
1891 Female, age 85, both hemispheres 10.5
1867 Male, age 76, both hemispheres 8.8
2436 Male, age 74, both hemispheres 8.8
Parahippocampal cortex
nTPM: 9.6
2622 Female, age 67, right hemisphere 11.3
2693 Female, age 94, both hemispheres 10.8
2532 Female, age 72, left hemisphere 10.1
1990 Female, age 91, right hemisphere 10.0
2692 Male, age 74, both hemispheres 9.7
2245 Female, age 91, both hemispheres 9.5
1933 Female, age 85, both hemispheres 9.0
2018 Male, age 76, both hemispheres 8.7
2250 Female, age 67, right hemisphere 8.4
1850 Male, age 80, both hemispheres 8.1
Perirhinal gyrus
nTPM: 8.9
2848 Male, age 76, right hemisphere 9.6
1841 Female, age 85, right hemisphere 9.3
2521 Female, age 94, right hemisphere 9.3
1794 Male, age 80, right hemisphere 9.0
1847 Female, age 91, left hemisphere 7.2
Subiculum
nTPM: 9.8
2619 Male, age 74, both hemispheres 11.1
1901 Male, age 80, both hemispheres 10.2
2438 Female, age 94, left hemisphere 10.1
2042 Male, age 76, both hemispheres 10.0
2729 Female, age 91, right hemisphere 9.1
1977 Female, age 85, both hemispheres 8.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.9
Samples: 197

Max nTPM: 26.9
Min nTPM: 2.7
Std nTPM: 3.5
Median nTPM: 10.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 26.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 21.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 20.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 20.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 19.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 19.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 19.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 18.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 17.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 17.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 16.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.5
FF:10153-102I9 76 years, female 39.8
FF:10169-103B7 60 years, female 27.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 16.6
Samples: 4

Max nTPM: 19.5
Min nTPM: 12.1
Sample A Female 19.5
Sample B Female 15.6
Sample C Male 19.2
Sample D Male 12.1
Entorhinal cortex
nTPM: 13.5
Samples: 4

Max nTPM: 14.6
Min nTPM: 12.6
Sample A Female 13.2
Sample B Female 14.6
Sample C Male 13.7
Sample D Male 12.6
Subiculum
nTPM: 14.4
Samples: 4

Max nTPM: 17.4
Min nTPM: 12.3
Sample A Female 17.4
Sample B Female 14.9
Sample C Male 13.0
Sample D Male 12.3
Ventral hippocampus
nTPM: 15.3
Samples: 4

Max nTPM: 17.5
Min nTPM: 12.2
Sample A Female 15.4
Sample B Female 12.2
Sample C Male 17.5
Sample D Male 15.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 13.6
Sample A Male 16.2
Sample B Male 14.0
Sample C Female 13.6
Sample D Female 16.7
Hippocampal formation
nTPM: 14.3
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.5
Sample A Male 12.5
Sample B Male 15.0
Sample C Female 16.6
Sample D Female 13.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.3
176778 Antisense, RP_040604_01_F05, Mouse strain C57BL/6J (56 days, male) 8.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.