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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.3 nTPM
HPA:77.3 nTPM
GTEx:55.4 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:66.2 nTPM
Mouse:130.1 nTPM
Allen mouse:13.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.0
2019 Male, age 18, unknown 84.2
2586 Male, age 75, left hemisphere 79.6
2411 Female, age 72, unknown 75.5
1827 Male, age 72, unknown 75.1
2666 Male, age 74, left hemisphere 74.5
2828 Female, age 72, unknown 74.1
1870 Female, age 42, unknown 71.5
2219 Male, age 76, both hemispheres 68.7
1833 Male, age 53, unknown 68.4
1830 Male, age 51, unknown 68.3
Dorsal raphe nucleus
nTPM: 71.9
2298 Female, age 72, unknown 76.8
1828 Male, age 53, unknown 72.7
2047 Male, age 72, unknown 70.7
2750 Male, age 76, both hemispheres 69.7
2016 Female, age 72, unknown 69.5
Inferior colliculus
nTPM: 72.5
2097 Female, age 72, unknown 80.0
1890 Male, age 53, unknown 73.4
1848 Female, age 42, unknown 71.2
2849 Male, age 72, unknown 65.4
Median raphe nucleus
nTPM: 68.1
2220 Male, age 76, midline 68.1
Pedunculopontine tegmental nucleus
nTPM: 68.8
1921 Female, age 85, both hemispheres 72.7
2334 Male, age 80, both hemispheres 69.4
2338 Male, age 61, both hemispheres 64.3
Periaquaductal grey, anterior
nTPM: 75.8
2502 Female, age 75, unknown 76.7
1795 Male, age 51, unknown 76.4
1947 Male, age 18, unknown 74.2
Periaquaductal grey, dorsal
nTPM: 68.7
2464 Female, age 72, unknown 71.0
1840 Male, age 53, unknown 69.6
1831 Male, age 72, unknown 69.5
2850 Male, age 76, both hemispheres 64.7
Periaquaductal grey, lateral
nTPM: 68.4
2053 Male, age 18, unknown 69.1
2272 Male, age 74, both hemispheres 68.8
2140 Male, age 76, both hemispheres 67.4
Pretectal area
nTPM: 77.3
2007 Male, age 72, unknown 88.5
1816 Male, age 51, unknown 84.5
1817 Female, age 42, unknown 82.6
1815 Male, age 53, unknown 80.4
1944 Female, age 72, unknown 79.4
2667 Female, age 75, unknown 78.2
2407 Male, age 75, both hemispheres 75.9
2316 Male, age 76, right hemisphere 70.6
2825 Male, age 18, unknown 70.1
2273 Male, age 74, both hemispheres 70.0
2224 Female, age 72, unknown 69.9
Red nucleus
nTPM: 72.2
2785 Male, age 18, unknown 79.3
1821 Female, age 72, unknown 76.1
2588 Male, age 74, left hemisphere 76.1
2584 Male, age 75, left hemisphere 73.3
2503 Female, age 72, unknown 72.5
1904 Male, age 53, unknown 72.4
2725 Female, age 75, unknown 71.7
2227 Male, age 72, unknown 69.9
2769 Male, age 72, unknown 69.9
1865 Male, age 51, unknown 69.3
1954 Female, age 42, unknown 68.7
2823 Male, age 76, right hemisphere 67.4
Substantia nigra
nTPM: 73.9
1889 Female, age 72, unknown 78.5
1851 Male, age 51, unknown 78.2
2241 Male, age 72, unknown 77.9
2583 Male, age 75, right hemisphere 76.3
1916 Female, age 42, unknown 75.5
2409 Female, age 72, unknown 73.5
2665 Male, age 74, both hemispheres 72.3
1941 Male, age 53, unknown 71.8
2590 Female, age 75, unknown 71.6
2699 Male, age 18, unknown 63.9
Superior colliculus
nTPM: 73.9
2664 Male, age 75, both hemispheres 78.6
2087 Female, age 72, unknown 78.5
2261 Male, age 18, unknown 77.4
1796 Male, age 53, unknown 75.7
2668 Female, age 75, unknown 73.9
1839 Male, age 51, unknown 72.1
1995 Male, age 72, unknown 72.1
1913 Female, age 42, unknown 71.2
2587 Male, age 74, left hemisphere 70.1
1895 Male, age 76, right hemisphere 69.8
Ventral tegmental area
nTPM: 72.3
2410 Female, age 72, unknown 77.7
1915 Female, age 42, unknown 74.9
1942 Male, age 51, unknown 71.7
2021 Male, age 53, unknown 70.7
2218 Male, age 76, both hemispheres 69.7
2223 Female, age 72, unknown 69.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.4
Samples: 139

Max nTPM: 105.5
Min nTPM: 29.5
Std nTPM: 12.8
Median nTPM: 53.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 94.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 85.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 82.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 81.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 79.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 79.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 77.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.2
Pig sample Sample description nTPM
Midbrain
nTPM: 61.2
Samples: 4

Max nTPM: 75.9
Min nTPM: 49.1
Sample A Female 55.6
Sample B Female 49.1
Sample C Male 75.9
Sample D Male 64.1
Periaqueductal gray
nTPM: 48.7
Samples: 3

Max nTPM: 56.7
Min nTPM: 44.2
Sample B Female 44.2
Sample C Male 56.7
Sample D Male 45.3
Substantia nigra
nTPM: 57.3
Samples: 4

Max nTPM: 75.2
Min nTPM: 43.4
Sample A Female 75.2
Sample B Female 44.9
Sample C Male 65.6
Sample D Male 43.4
Superior colliculi
nTPM: 66.3
Samples: 4

Max nTPM: 76.0
Min nTPM: 50.5
Sample A Female 76.0
Sample B Female 50.5
Sample C Male 69.7
Sample D Male 68.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 130.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.1
Samples: 4

Max nTPM: 136.4
Min nTPM: 123.8
Sample A Male 123.8
Sample B Male 130.6
Sample C Female 136.4
Sample D Female 129.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.2
386010 Antisense, RP_040625_01_H10, Mouse strain C57BL/6J (56 days, male) 13.2

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