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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.3 nTPM
HPA:11.3 nTPM
GTEx:5.8 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:7.7 nTPM
Mouse:1.9 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.0
1781 Male, age 74, unknown 13.0
2846 Female, age 79, unknown 12.9
1854 Male, age 80, left hemisphere 10.8
2290 Female, age 72, unknown 10.8
2481 Female, age 94, left hemisphere 10.6
1857 Female, age 85, left hemisphere 10.4
2289 Male, age 61, right hemisphere 9.9
2288 Male, age 75, left hemisphere 9.5
Claustrum
nTPM: 10.2
2196 Female, age 79, unknown 11.2
2292 Female, age 85, both hemispheres 10.7
2645 Female, age 72, unknown 10.4
1956 Male, age 74, unknown 10.3
2284 Female, age 91, both hemispheres 10.1
2392 Female, age 94, both hemispheres 10.1
2198 Male, age 80, both hemispheres 9.8
2491 Male, age 75, both hemispheres 9.7
2568 Male, age 61, both hemispheres 9.7
Globus pallidus, externus
nTPM: 11.2
2772 Female, age 79, unknown 11.8
1996 Male, age 80, right hemisphere 11.1
2567 Female, age 72, unknown 11.1
2646 Male, age 61, right hemisphere 11.0
2395 Male, age 75, both hemispheres 10.9
Globus pallidus, internus
nTPM: 11.2
2483 Female, age 94, right hemisphere 11.9
2037 Male, age 80, right hemisphere 11.8
2566 Female, age 72, unknown 11.4
2111 Female, age 85, right hemisphere 11.3
2778 Female, age 91, both hemispheres 11.0
2287 Male, age 75, right hemisphere 10.8
1818 Male, age 74, unknown 10.5
Nucleus accumbens
nTPM: 10.2
1783 Male, age 74, unknown 10.6
2698 Female, age 72, unknown 10.5
1856 Female, age 91, right hemisphere 10.3
2391 Female, age 94, left hemisphere 10.3
1806 Female, age 85, left hemisphere 10.2
2732 Male, age 80, right hemisphere 10.2
2286 Male, age 75, left hemisphere 9.6
2824 Male, age 61, right hemisphere 9.6
Nucleus basalis of Meynert
nTPM: 11.3
2569 Male, age 61, both hemispheres 11.5
2821 Male, age 75, both hemispheres 11.4
2393 Male, age 80, right hemisphere 11.2
2484 Female, age 94, left hemisphere 11.2
Nucleus of the diagonal band
nTPM: 10.2
2029 Male, age 61, right hemisphere 10.9
1812 Female, age 91, both hemispheres 10.1
1979 Male, age 74, unknown 10.1
2195 Female, age 85, both hemispheres 10.1
2775 Male, age 80, right hemisphere 9.9
Olfactory tubercle
nTPM: 10.2
1846 Male, age 80, right hemisphere 10.5
1998 Female, age 91, both hemispheres 10.4
2856 Male, age 75, right hemisphere 10.3
2487 Female, age 94, left hemisphere 9.6
Putamen
nTPM: 10.7
2466 Female, age 79, unknown 11.4
2489 Female, age 72, unknown 11.4
1937 Female, age 91, right hemisphere 10.9
2482 Female, age 94, left hemisphere 10.7
1838 Male, age 80, right hemisphere 10.6
1829 Male, age 74, unknown 10.2
2647 Male, age 75, left hemisphere 9.8
Septal nuclei
nTPM: 10.4
2394 Male, age 61, left hemisphere 12.5
2199 Male, age 80, right hemisphere 11.0
2031 Female, age 72, unknown 10.2
1960 Male, age 74, unknown 10.1
2059 Female, age 85, both hemispheres 10.1
2009 Female, age 91, both hemispheres 9.7
2629 Female, age 94, right hemisphere 9.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.5
Samples: 246

Max nTPM: 38.6
Min nTPM: 0.1
Std nTPM: 6.6
Median nTPM: 2.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 38.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 30.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 30.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 28.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 28.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 25.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 24.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 24.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 23.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 22.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 21.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.6
Samples: 246

Max nTPM: 73.9
Min nTPM: 0.1
Std nTPM: 9.5
Median nTPM: 2.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 73.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 53.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 52.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 50.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 45.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 40.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 36.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 33.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 33.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 33.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 25.5
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Brain - Putamen (basal ganglia)
Average nTPM: 5.8
Samples: 205

Max nTPM: 79.7
Min nTPM: 0.2
Std nTPM: 8.3
Median nTPM: 3.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 79.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 37.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 35.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 32.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 31.9
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 26.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 24.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 22.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 21.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 20.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 20.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.5
FF:10164-103B2 76 years, female 3.5
Globus pallidus
Scaled Tags Per Million: 17.0
FF:10175-103C4 60 years, female 26.0
FF:10161-103A8 76 years, female 8.1
Nucleus accumbens
Scaled Tags Per Million: 3.1
FF:10037-101F1 23-56 years, mixed 3.1
Putamen
Scaled Tags Per Million: 6.1
FF:10176-103C5 60 years, female 6.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.7
Pig sample Sample description nTPM
Caudate
nTPM: 6.5
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 6.7
Sample C Male 7.0
Sample D Male 7.0
Putamen
nTPM: 7.7
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.1
Sample A Female 7.6
Sample B Female 8.3
Sample C Male 7.6
Sample D Male 7.1
Septum
nTPM: 6.3
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 6.8
Sample C Male 7.0
Sample D Male 6.0
Ventral pallidum
nTPM: 6.8
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 7.0
Sample C Male 7.4
Sample D Male 6.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.9
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.6
Sample A Male 2.2
Sample B Male 1.6
Sample C Female 2.1
Sample D Female 1.6
Septum
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.8
Sample A Male 1.6
Sample B Male 0.8
Sample C Female 1.0
Sample D Female 1.3
Ventral forebrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.6
Sample A Male 1.9
Sample B Male 1.7
Sample C Female 2.2
Sample D Female 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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