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ATG3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.2 nTPM
HPA:48.2 nTPM
GTEx:59.5 nTPM
FANTOM5:126.3 Scaled Tags Per Million
Pig:87.5 nTPM
Mouse:42.4 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
1870 Female, age 42, unknown 47.1
2411 Female, age 72, unknown 46.8
1833 Male, age 53, unknown 46.7
2019 Male, age 18, unknown 45.6
1830 Male, age 51, unknown 45.3
1827 Male, age 72, unknown 40.9
2828 Female, age 72, unknown 40.4
2666 Male, age 74, left hemisphere 40.2
2219 Male, age 76, both hemispheres 40.0
2586 Male, age 75, left hemisphere 38.2
Dorsal raphe nucleus
nTPM: 41.2
2750 Male, age 76, both hemispheres 45.0
1828 Male, age 53, unknown 41.9
2298 Female, age 72, unknown 41.0
2016 Female, age 72, unknown 40.3
2047 Male, age 72, unknown 37.7
Inferior colliculus
nTPM: 41.3
1848 Female, age 42, unknown 41.8
2097 Female, age 72, unknown 41.4
2849 Male, age 72, unknown 41.1
1890 Male, age 53, unknown 40.9
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Pedunculopontine tegmental nucleus
nTPM: 43.6
2334 Male, age 80, both hemispheres 46.6
2338 Male, age 61, both hemispheres 43.3
1921 Female, age 85, both hemispheres 40.7
Periaquaductal grey, anterior
nTPM: 38.4
2502 Female, age 75, unknown 39.3
1947 Male, age 18, unknown 38.6
1795 Male, age 51, unknown 37.2
Periaquaductal grey, dorsal
nTPM: 39.3
2464 Female, age 72, unknown 41.2
2850 Male, age 76, both hemispheres 40.9
1831 Male, age 72, unknown 38.5
1840 Male, age 53, unknown 36.6
Periaquaductal grey, lateral
nTPM: 38.7
2140 Male, age 76, both hemispheres 39.1
2053 Male, age 18, unknown 38.5
2272 Male, age 74, both hemispheres 38.4
Pretectal area
nTPM: 40.7
1817 Female, age 42, unknown 44.4
1815 Male, age 53, unknown 43.9
2007 Male, age 72, unknown 42.8
1816 Male, age 51, unknown 40.9
2316 Male, age 76, right hemisphere 40.6
1944 Female, age 72, unknown 40.5
2224 Female, age 72, unknown 39.9
2825 Male, age 18, unknown 39.5
2667 Female, age 75, unknown 39.4
2273 Male, age 74, both hemispheres 39.3
2407 Male, age 75, both hemispheres 36.9
Red nucleus
nTPM: 48.2
2503 Female, age 72, unknown 51.6
1865 Male, age 51, unknown 51.5
1821 Female, age 72, unknown 51.4
1904 Male, age 53, unknown 50.7
1954 Female, age 42, unknown 49.6
2769 Male, age 72, unknown 49.2
2823 Male, age 76, right hemisphere 48.8
2227 Male, age 72, unknown 47.9
2725 Female, age 75, unknown 47.3
2785 Male, age 18, unknown 46.6
2588 Male, age 74, left hemisphere 45.1
2584 Male, age 75, left hemisphere 38.5
Substantia nigra
nTPM: 41.0
1889 Female, age 72, unknown 44.7
2699 Male, age 18, unknown 42.2
1851 Male, age 51, unknown 41.8
2241 Male, age 72, unknown 40.9
2409 Female, age 72, unknown 40.6
1916 Female, age 42, unknown 40.5
2590 Female, age 75, unknown 40.4
1941 Male, age 53, unknown 40.1
2583 Male, age 75, right hemisphere 40.0
2665 Male, age 74, both hemispheres 38.5
Superior colliculus
nTPM: 41.5
1913 Female, age 42, unknown 46.4
1995 Male, age 72, unknown 45.0
2587 Male, age 74, left hemisphere 43.8
2668 Female, age 75, unknown 42.5
1895 Male, age 76, right hemisphere 42.2
1839 Male, age 51, unknown 41.0
2261 Male, age 18, unknown 39.8
2087 Female, age 72, unknown 39.3
1796 Male, age 53, unknown 39.0
2664 Male, age 75, both hemispheres 36.3
Ventral tegmental area
nTPM: 42.4
2223 Female, age 72, unknown 46.3
2410 Female, age 72, unknown 45.6
2218 Male, age 76, both hemispheres 43.4
1915 Female, age 42, unknown 40.9
2021 Male, age 53, unknown 39.8
1942 Male, age 51, unknown 38.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.5
Samples: 139

Max nTPM: 130.6
Min nTPM: 34.5
Std nTPM: 15.6
Median nTPM: 56.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 130.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 113.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 93.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 91.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 91.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 90.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 89.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 85.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 85.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 84.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 82.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.3
FF:10158-103A5 76 years, female 126.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.5
Pig sample Sample description nTPM
Midbrain
nTPM: 87.5
Samples: 4

Max nTPM: 148.8
Min nTPM: 57.2
Sample A Female 148.8
Sample B Female 82.3
Sample C Male 57.2
Sample D Male 61.5
Periaqueductal gray
nTPM: 62.5
Samples: 3

Max nTPM: 71.6
Min nTPM: 56.8
Sample B Female 71.6
Sample C Male 56.8
Sample D Male 59.1
Substantia nigra
nTPM: 76.9
Samples: 4

Max nTPM: 95.0
Min nTPM: 59.5
Sample A Female 90.9
Sample B Female 59.5
Sample C Male 62.2
Sample D Male 95.0
Superior colliculi
nTPM: 73.6
Samples: 4

Max nTPM: 96.4
Min nTPM: 50.2
Sample A Female 96.4
Sample B Female 50.2
Sample C Male 69.9
Sample D Male 77.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 43.7
Min nTPM: 40.7
Sample A Male 42.6
Sample B Male 43.7
Sample C Female 42.4
Sample D Female 40.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
70445592 Antisense, RP_050614_04_B07, Mouse strain C57BL/6J (56 days, male) 3.3
74988519 Antisense, RP_060315_05_E07, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.