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NICN1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.8 nTPM
HPA:21.8 nTPM
GTEx:18.9 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:99.5 nTPM
Allen mouse:9.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.8
Sample id Sample description nTPM
Hippocampus
nTPM: 18.6
1898 Male, age 80, left hemisphere 21.5
2148 Female, age 91, left hemisphere 19.1
2621 Female, age 67, right hemisphere 18.8
1855 Male, age 76, left hemisphere 17.9
2529 Female, age 94, left hemisphere 17.3
1911 Female, age 85, right hemisphere 16.8
Dentate gyrus
nTPM: 19.3
1927 Female, age 91, both hemispheres 20.9
2530 Female, age 94, left hemisphere 20.6
2531 Female, age 67, both hemispheres 19.0
2010 Male, age 76, both hemispheres 18.7
2246 Female, age 85, both hemispheres 18.4
2528 Male, age 74, both hemispheres 18.3
Entorhinal gyrus
nTPM: 21.4
2764 Male, age 80, right hemisphere 24.0
2613 Female, age 94, left hemisphere 23.7
1938 Female, age 85, left hemisphere 22.0
1787 Male, age 76, left hemisphere 21.1
2686 Male, age 75, right hemisphere 19.2
2117 Female, age 91, right hemisphere 18.4
Hippocampus, CA1
nTPM: 19.6
2749 Male, age 80, left hemisphere 24.5
2527 Male, age 74, both hemispheres 18.9
2082 Female, age 91, right hemisphere 18.8
1873 Female, age 85, both hemispheres 18.3
2045 Male, age 76, both hemispheres 17.6
Hippocampus, CA2
nTPM: 20.3
1892 Male, age 76, both hemispheres 25.4
1963 Male, age 80, left hemisphere 23.2
2437 Female, age 94, left hemisphere 19.5
1940 Female, age 85, left hemisphere 18.1
2113 Female, age 91, right hemisphere 18.1
2249 Male, age 74, both hemispheres 17.7
Hippocampus, CA3
nTPM: 19.5
2137 Male, age 80, left hemisphere 22.6
2620 Female, age 94, left hemisphere 20.4
1867 Male, age 76, both hemispheres 20.1
2861 Female, age 67, both hemispheres 19.0
1891 Female, age 85, both hemispheres 18.1
2436 Male, age 74, both hemispheres 16.7
Parahippocampal cortex
nTPM: 20.1
1850 Male, age 80, both hemispheres 23.4
2532 Female, age 72, left hemisphere 22.1
2693 Female, age 94, both hemispheres 21.1
2622 Female, age 67, right hemisphere 20.8
1990 Female, age 91, right hemisphere 20.0
2245 Female, age 91, both hemispheres 20.0
1933 Female, age 85, both hemispheres 19.7
2692 Male, age 74, both hemispheres 19.7
2250 Female, age 67, right hemisphere 17.5
2018 Male, age 76, both hemispheres 17.0
Perirhinal gyrus
nTPM: 21.8
1794 Male, age 80, right hemisphere 22.9
1847 Female, age 91, left hemisphere 22.2
2848 Male, age 76, right hemisphere 22.2
1841 Female, age 85, right hemisphere 21.7
2521 Female, age 94, right hemisphere 19.9
Subiculum
nTPM: 18.4
1977 Female, age 85, both hemispheres 21.6
1901 Male, age 80, both hemispheres 20.5
2619 Male, age 74, both hemispheres 18.4
2729 Female, age 91, right hemisphere 17.8
2438 Female, age 94, left hemisphere 16.5
2042 Male, age 76, both hemispheres 15.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.9
Samples: 197

Max nTPM: 38.4
Min nTPM: 5.5
Std nTPM: 6.8
Median nTPM: 17.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 38.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 36.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 35.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 35.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 35.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 34.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 34.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 33.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 32.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 32.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 31.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.4
FF:10169-103B7 60 years, female 36.6
FF:10153-102I9 76 years, female 30.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 22.6
Samples: 4

Max nTPM: 27.3
Min nTPM: 17.6
Sample A Female 27.3
Sample B Female 23.9
Sample C Male 21.6
Sample D Male 17.6
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 22.4
Min nTPM: 20.1
Sample A Female 22.4
Sample B Female 20.1
Sample C Male 22.2
Sample D Male 20.9
Subiculum
nTPM: 22.5
Samples: 4

Max nTPM: 23.8
Min nTPM: 20.8
Sample A Female 23.8
Sample B Female 22.4
Sample C Male 23.0
Sample D Male 20.8
Ventral hippocampus
nTPM: 22.1
Samples: 4

Max nTPM: 26.8
Min nTPM: 18.0
Sample A Female 23.5
Sample B Female 18.0
Sample C Male 26.8
Sample D Male 19.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 99.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 99.5
Samples: 4

Max nTPM: 104.5
Min nTPM: 95.9
Sample A Male 95.9
Sample B Male 104.5
Sample C Female 97.4
Sample D Female 100.1
Hippocampal formation
nTPM: 91.4
Samples: 4

Max nTPM: 101.9
Min nTPM: 84.6
Sample A Male 101.9
Sample B Male 90.2
Sample C Female 88.7
Sample D Female 84.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.5
71608209 Antisense, RP_050927_01_B05, Mouse strain C57BL/6J (56 days, male) 11.6
75773512 Antisense, RP_060530_01_A02, Mouse strain C57BL/6J (56 days, male) 9.0
71833000 Antisense, RP_051005_04_A09, Mouse strain C57BL/6J (56 days, male) 7.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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