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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:17.8 nTPM
HPA:17.8 nTPM
GTEx:28.5 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:75.3 nTPM
Mouse:93.4 nTPM
Allen mouse:7.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040979Antibody HPA041090
Glial cells Not detectedNot detected
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.8
Sample id Sample description nTPM
Hippocampus
nTPM: 15.5
2621 Female, age 67, right hemisphere 19.8
1898 Male, age 80, left hemisphere 18.7
1855 Male, age 76, left hemisphere 15.8
1911 Female, age 85, right hemisphere 14.2
2529 Female, age 94, left hemisphere 12.6
2148 Female, age 91, left hemisphere 12.1
Dentate gyrus
nTPM: 14.9
2010 Male, age 76, both hemispheres 18.6
1927 Female, age 91, both hemispheres 15.8
2530 Female, age 94, left hemisphere 15.4
2246 Female, age 85, both hemispheres 15.0
2531 Female, age 67, both hemispheres 12.4
2528 Male, age 74, both hemispheres 12.1
Entorhinal gyrus
nTPM: 12.3
1938 Female, age 85, left hemisphere 13.5
2613 Female, age 94, left hemisphere 13.4
1787 Male, age 76, left hemisphere 12.4
2764 Male, age 80, right hemisphere 12.0
2686 Male, age 75, right hemisphere 11.8
2117 Female, age 91, right hemisphere 10.9
Hippocampus, CA1
nTPM: 17.8
2749 Male, age 80, left hemisphere 30.7
1873 Female, age 85, both hemispheres 17.1
2527 Male, age 74, both hemispheres 14.5
2082 Female, age 91, right hemisphere 14.3
2045 Male, age 76, both hemispheres 12.6
Hippocampus, CA2
nTPM: 15.1
1892 Male, age 76, both hemispheres 20.5
1963 Male, age 80, left hemisphere 19.3
2249 Male, age 74, both hemispheres 14.3
2113 Female, age 91, right hemisphere 12.5
2437 Female, age 94, left hemisphere 12.3
1940 Female, age 85, left hemisphere 11.5
Hippocampus, CA3
nTPM: 14.6
2137 Male, age 80, left hemisphere 21.8
1867 Male, age 76, both hemispheres 16.3
2861 Female, age 67, both hemispheres 13.9
2436 Male, age 74, both hemispheres 12.8
2620 Female, age 94, left hemisphere 11.6
1891 Female, age 85, both hemispheres 11.3
Parahippocampal cortex
nTPM: 12.6
2245 Female, age 91, both hemispheres 15.1
2250 Female, age 67, right hemisphere 13.9
1850 Male, age 80, both hemispheres 13.5
2018 Male, age 76, both hemispheres 13.5
1933 Female, age 85, both hemispheres 12.8
2532 Female, age 72, left hemisphere 12.7
2693 Female, age 94, both hemispheres 12.1
1990 Female, age 91, right hemisphere 11.1
2622 Female, age 67, right hemisphere 11.0
2692 Male, age 74, both hemispheres 10.7
Perirhinal gyrus
nTPM: 14.0
1794 Male, age 80, right hemisphere 15.6
1847 Female, age 91, left hemisphere 15.5
1841 Female, age 85, right hemisphere 13.3
2521 Female, age 94, right hemisphere 13.3
2848 Male, age 76, right hemisphere 12.5
Subiculum
nTPM: 12.6
1901 Male, age 80, both hemispheres 15.5
1977 Female, age 85, both hemispheres 14.2
2042 Male, age 76, both hemispheres 13.1
2619 Male, age 74, both hemispheres 11.6
2729 Female, age 91, right hemisphere 11.4
2438 Female, age 94, left hemisphere 9.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.5
Samples: 197

Max nTPM: 73.0
Min nTPM: 7.1
Std nTPM: 11.7
Median nTPM: 26.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 73.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 62.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 57.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 53.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 53.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 53.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 52.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 51.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 51.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 50.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 49.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 41.8
FF:10153-102I9 76 years, female 42.9
FF:10169-103B7 60 years, female 40.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 75.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 75.3
Samples: 4

Max nTPM: 93.2
Min nTPM: 55.5
Sample A Female 93.2
Sample B Female 79.5
Sample C Male 72.9
Sample D Male 55.5
Entorhinal cortex
nTPM: 73.9
Samples: 4

Max nTPM: 81.7
Min nTPM: 64.0
Sample A Female 78.5
Sample B Female 81.7
Sample C Male 71.5
Sample D Male 64.0
Subiculum
nTPM: 70.5
Samples: 4

Max nTPM: 85.6
Min nTPM: 62.1
Sample A Female 85.6
Sample B Female 63.1
Sample C Male 71.0
Sample D Male 62.1
Ventral hippocampus
nTPM: 70.7
Samples: 4

Max nTPM: 80.9
Min nTPM: 54.5
Sample A Female 80.9
Sample B Female 54.5
Sample C Male 68.7
Sample D Male 78.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 93.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 49.8
Samples: 4

Max nTPM: 59.1
Min nTPM: 38.9
Sample A Male 50.9
Sample B Male 50.3
Sample C Female 59.1
Sample D Female 38.9
Hippocampal formation
nTPM: 93.4
Samples: 4

Max nTPM: 100.6
Min nTPM: 83.5
Sample A Male 96.3
Sample B Male 93.2
Sample C Female 100.6
Sample D Female 83.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.3
70300469 Antisense, RP_050607_01_F02, Mouse strain C57BL/6J (56 days, male) 9.8
71211308 Antisense, RP_050816_01_B12, Mouse strain C57BL/6J (56 days, male) 7.0
75041527 Antisense, RP_060412_04_E10, Mouse strain C57BL/6J (56 days, male) 5.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.