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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:71.8 nTPM
FANTOM5:147.3 Scaled Tags Per Million
Mouse:11.6 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036455
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.2
2481 Female, age 94, left hemisphere 37.1
2290 Female, age 72, unknown 34.8
1854 Male, age 80, left hemisphere 34.5
2288 Male, age 75, left hemisphere 34.5
1857 Female, age 85, left hemisphere 34.2
2846 Female, age 79, unknown 33.9
1781 Male, age 74, unknown 32.6
2289 Male, age 61, right hemisphere 32.1
Claustrum
nTPM: 32.6
1956 Male, age 74, unknown 34.3
2491 Male, age 75, both hemispheres 34.1
2198 Male, age 80, both hemispheres 33.5
2292 Female, age 85, both hemispheres 33.1
2196 Female, age 79, unknown 32.9
2392 Female, age 94, both hemispheres 32.6
2284 Female, age 91, both hemispheres 31.5
2568 Male, age 61, both hemispheres 30.9
2645 Female, age 72, unknown 30.4
Globus pallidus, externus
nTPM: 36.4
2772 Female, age 79, unknown 40.9
1996 Male, age 80, right hemisphere 39.4
2646 Male, age 61, right hemisphere 35.0
2395 Male, age 75, both hemispheres 34.6
2567 Female, age 72, unknown 32.2
Globus pallidus, internus
nTPM: 37.0
2287 Male, age 75, right hemisphere 40.0
2778 Female, age 91, both hemispheres 38.9
2483 Female, age 94, right hemisphere 38.4
2111 Female, age 85, right hemisphere 36.5
2037 Male, age 80, right hemisphere 36.2
1818 Male, age 74, unknown 36.1
2566 Female, age 72, unknown 32.9
Nucleus accumbens
nTPM: 34.6
2286 Male, age 75, left hemisphere 37.5
2391 Female, age 94, left hemisphere 35.6
1806 Female, age 85, left hemisphere 35.4
2698 Female, age 72, unknown 34.1
1856 Female, age 91, right hemisphere 33.9
2824 Male, age 61, right hemisphere 33.6
1783 Male, age 74, unknown 33.5
2732 Male, age 80, right hemisphere 33.4
Nucleus basalis of Meynert
nTPM: 33.8
2484 Female, age 94, left hemisphere 34.2
2569 Male, age 61, both hemispheres 34.2
2821 Male, age 75, both hemispheres 33.5
2393 Male, age 80, right hemisphere 33.1
Nucleus of the diagonal band
nTPM: 33.4
1812 Female, age 91, both hemispheres 34.8
2775 Male, age 80, right hemisphere 34.5
1979 Male, age 74, unknown 33.2
2195 Female, age 85, both hemispheres 32.9
2029 Male, age 61, right hemisphere 31.7
Olfactory tubercle
nTPM: 32.8
1846 Male, age 80, right hemisphere 34.1
2856 Male, age 75, right hemisphere 32.5
1998 Female, age 91, both hemispheres 32.4
2487 Female, age 94, left hemisphere 32.1
Putamen
nTPM: 33.5
2482 Female, age 94, left hemisphere 36.8
2466 Female, age 79, unknown 33.8
1937 Female, age 91, right hemisphere 33.3
1838 Male, age 80, right hemisphere 33.2
2647 Male, age 75, left hemisphere 33.0
1829 Male, age 74, unknown 32.7
2489 Female, age 72, unknown 32.0
Septal nuclei
nTPM: 33.1
2031 Female, age 72, unknown 34.6
1960 Male, age 74, unknown 34.1
2199 Male, age 80, right hemisphere 34.1
2009 Female, age 91, both hemispheres 32.7
2394 Male, age 61, left hemisphere 32.3
2059 Female, age 85, both hemispheres 32.1
2629 Female, age 94, right hemisphere 32.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 71.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 68.5
Samples: 246

Max nTPM: 134.1
Min nTPM: 32.4
Std nTPM: 14.1
Median nTPM: 65.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 134.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 129.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 112.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 107.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 105.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 104.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 103.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 102.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 101.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 101.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 101.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 71.8
Samples: 246

Max nTPM: 161.0
Min nTPM: 26.9
Std nTPM: 16.8
Median nTPM: 70.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 161.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 139.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 133.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 126.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 119.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 118.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 115.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 112.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 112.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 109.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 109.2
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Brain - Putamen (basal ganglia)
Average nTPM: 71.0
Samples: 205

Max nTPM: 145.3
Min nTPM: 35.8
Std nTPM: 13.8
Median nTPM: 69.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 145.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 104.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 104.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 103.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 101.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 101.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 99.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 98.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 98.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 95.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 95.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 100.7
FF:10164-103B2 76 years, female 100.7
Globus pallidus
Scaled Tags Per Million: 147.3
FF:10175-103C4 60 years, female 179.9
FF:10161-103A8 76 years, female 114.7
Nucleus accumbens
Scaled Tags Per Million: 78.8
FF:10037-101F1 23-56 years, mixed 78.8
Putamen
Scaled Tags Per Million: 96.8
FF:10176-103C5 60 years, female 96.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.6
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.4
Sample A Male 8.4
Sample B Male 8.7
Sample C Female 10.0
Sample D Female 11.1
Septum
nTPM: 11.6
Samples: 4

Max nTPM: 12.2
Min nTPM: 11.3
Sample A Male 11.3
Sample B Male 11.4
Sample C Female 12.2
Sample D Female 11.6
Ventral forebrain
nTPM: 11.0
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.8
Sample A Male 11.9
Sample B Male 9.8
Sample C Female 11.1
Sample D Female 11.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
276271 Antisense, RP_040609_01_D04, Mouse strain C57BL/6J (56 days, male) 1.4
227746 Antisense, RP_040609_01_D04, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.2
276271 Antisense, RP_040609_01_D04, Mouse strain C57BL/6J (56 days, male) 1.2
227746 Antisense, RP_040609_01_D04, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.