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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA:21.1 nTPM
GTEx:17.0 nTPM
FANTOM5:5.9 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:37.5 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.8
2846 Female, age 79, unknown 27.0
1857 Female, age 85, left hemisphere 22.3
2290 Female, age 72, unknown 19.4
1854 Male, age 80, left hemisphere 15.6
2288 Male, age 75, left hemisphere 15.0
2289 Male, age 61, right hemisphere 13.5
1781 Male, age 74, unknown 12.3
2481 Female, age 94, left hemisphere 9.6
Claustrum
nTPM: 6.9
2568 Male, age 61, both hemispheres 8.4
2392 Female, age 94, both hemispheres 8.0
2198 Male, age 80, both hemispheres 7.5
2284 Female, age 91, both hemispheres 7.5
2491 Male, age 75, both hemispheres 7.0
2196 Female, age 79, unknown 6.5
1956 Male, age 74, unknown 6.1
2645 Female, age 72, unknown 5.8
2292 Female, age 85, both hemispheres 5.5
Globus pallidus, externus
nTPM: 8.0
1996 Male, age 80, right hemisphere 9.0
2646 Male, age 61, right hemisphere 8.6
2395 Male, age 75, both hemispheres 8.3
2567 Female, age 72, unknown 7.2
2772 Female, age 79, unknown 6.7
Globus pallidus, internus
nTPM: 7.3
2483 Female, age 94, right hemisphere 8.2
2037 Male, age 80, right hemisphere 7.7
2287 Male, age 75, right hemisphere 7.6
2778 Female, age 91, both hemispheres 7.3
1818 Male, age 74, unknown 7.1
2111 Female, age 85, right hemisphere 6.8
2566 Female, age 72, unknown 6.5
Nucleus accumbens
nTPM: 11.9
1806 Female, age 85, left hemisphere 16.4
2286 Male, age 75, left hemisphere 14.9
2824 Male, age 61, right hemisphere 14.2
1783 Male, age 74, unknown 13.5
2698 Female, age 72, unknown 10.8
1856 Female, age 91, right hemisphere 9.8
2391 Female, age 94, left hemisphere 8.7
2732 Male, age 80, right hemisphere 6.5
Nucleus basalis of Meynert
nTPM: 13.7
2393 Male, age 80, right hemisphere 24.4
2821 Male, age 75, both hemispheres 11.7
2569 Male, age 61, both hemispheres 9.9
2484 Female, age 94, left hemisphere 8.7
Nucleus of the diagonal band
nTPM: 6.7
1812 Female, age 91, both hemispheres 7.5
1979 Male, age 74, unknown 6.9
2029 Male, age 61, right hemisphere 6.7
2775 Male, age 80, right hemisphere 6.4
2195 Female, age 85, both hemispheres 6.0
Olfactory tubercle
nTPM: 6.9
2856 Male, age 75, right hemisphere 7.7
1846 Male, age 80, right hemisphere 7.1
2487 Female, age 94, left hemisphere 6.7
1998 Female, age 91, both hemispheres 6.2
Putamen
nTPM: 21.1
2466 Female, age 79, unknown 30.7
1829 Male, age 74, unknown 28.5
1838 Male, age 80, right hemisphere 23.8
2489 Female, age 72, unknown 22.3
2647 Male, age 75, left hemisphere 18.1
1937 Female, age 91, right hemisphere 14.5
2482 Female, age 94, left hemisphere 9.6
Septal nuclei
nTPM: 6.9
2199 Male, age 80, right hemisphere 7.9
2009 Female, age 91, both hemispheres 7.2
2059 Female, age 85, both hemispheres 7.0
2629 Female, age 94, right hemisphere 7.0
2031 Female, age 72, unknown 6.8
2394 Male, age 61, left hemisphere 6.6
1960 Male, age 74, unknown 6.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.4
Samples: 246

Max nTPM: 38.7
Min nTPM: 2.0
Std nTPM: 6.5
Median nTPM: 11.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 38.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 34.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 32.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 29.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 28.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 28.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 27.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 27.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 27.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 25.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 25.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.7
Samples: 246

Max nTPM: 27.3
Min nTPM: 0.6
Std nTPM: 4.2
Median nTPM: 4.4
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 27.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 22.1
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 21.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 19.9
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 18.0
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 17.8
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 17.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 16.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 16.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 15.6
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 14.8
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Brain - Putamen (basal ganglia)
Average nTPM: 17.0
Samples: 205

Max nTPM: 51.6
Min nTPM: 2.4
Std nTPM: 10.0
Median nTPM: 15.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 51.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 49.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 47.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 43.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 43.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 42.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 41.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 40.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 39.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 38.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 37.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.6
FF:10164-103B2 76 years, female 2.6
Globus pallidus
Scaled Tags Per Million: 5.9
FF:10175-103C4 60 years, female 6.3
FF:10161-103A8 76 years, female 5.6
Nucleus accumbens
Scaled Tags Per Million: 4.8
FF:10037-101F1 23-56 years, mixed 4.8
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Caudate
nTPM: 14.8
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.0
Sample A Female 16.5
Sample B Female 13.9
Sample C Male 16.6
Sample D Male 12.0
Putamen
nTPM: 10.7
Samples: 4

Max nTPM: 14.5
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 9.9
Sample C Male 14.5
Sample D Male 11.2
Septum
nTPM: 11.1
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.4
Sample A Female 11.5
Sample B Female 10.6
Sample C Male 10.4
Sample D Male 11.8
Ventral pallidum
nTPM: 8.8
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.3
Sample A Female 9.7
Sample B Female 9.3
Sample C Male 6.3
Sample D Male 10.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.5
Samples: 4

Max nTPM: 45.0
Min nTPM: 28.5
Sample A Male 37.7
Sample B Male 45.0
Sample C Female 28.5
Sample D Female 38.9
Septum
nTPM: 5.3
Samples: 4

Max nTPM: 5.6
Min nTPM: 5.0
Sample A Male 5.5
Sample B Male 5.1
Sample C Female 5.6
Sample D Female 5.0
Ventral forebrain
nTPM: 9.2
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.5
Sample A Male 10.6
Sample B Male 8.9
Sample C Female 8.6
Sample D Female 8.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
71836878 Antisense, RP_051017_02_E08, Mouse strain C57BL/6J (56 days, male) 1.8
68546203 Antisense, RP_050120_02_B08, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.1
68546203 Antisense, RP_050120_02_B08, Mouse strain C57BL/6J (56 days, male) 0.2
71836878 Antisense, RP_051017_02_E08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.