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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.1 nTPM
HPA:61.1 nTPM
GTEx:75.8 nTPM
FANTOM5:193.9 Scaled Tags Per Million
Pig:173.7 nTPM
Mouse:128.1 nTPM
Allen mouse:16.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
1827 Male, age 72, unknown 73.2
2019 Male, age 18, unknown 57.2
2828 Female, age 72, unknown 50.0
2219 Male, age 76, both hemispheres 45.6
2411 Female, age 72, unknown 43.8
2586 Male, age 75, left hemisphere 39.1
2666 Male, age 74, left hemisphere 34.5
1870 Female, age 42, unknown 24.7
1830 Male, age 51, unknown 20.1
1833 Male, age 53, unknown 19.5
Dorsal raphe nucleus
nTPM: 45.1
2298 Female, age 72, unknown 65.0
2047 Male, age 72, unknown 56.3
1828 Male, age 53, unknown 41.0
2750 Male, age 76, both hemispheres 40.2
2016 Female, age 72, unknown 22.9
Inferior colliculus
nTPM: 38.7
2097 Female, age 72, unknown 47.0
1848 Female, age 42, unknown 41.2
1890 Male, age 53, unknown 33.4
2849 Male, age 72, unknown 33.4
Median raphe nucleus
nTPM: 41.7
2220 Male, age 76, midline 41.7
Pedunculopontine tegmental nucleus
nTPM: 48.2
1921 Female, age 85, both hemispheres 60.7
2334 Male, age 80, both hemispheres 48.1
2338 Male, age 61, both hemispheres 35.8
Periaquaductal grey, anterior
nTPM: 38.6
1795 Male, age 51, unknown 48.5
1947 Male, age 18, unknown 38.2
2502 Female, age 75, unknown 29.2
Periaquaductal grey, dorsal
nTPM: 26.2
2464 Female, age 72, unknown 38.5
1831 Male, age 72, unknown 28.2
1840 Male, age 53, unknown 27.2
2850 Male, age 76, both hemispheres 10.8
Periaquaductal grey, lateral
nTPM: 19.5
2053 Male, age 18, unknown 25.6
2272 Male, age 74, both hemispheres 24.0
2140 Male, age 76, both hemispheres 8.8
Pretectal area
nTPM: 61.1
1816 Male, age 51, unknown 110.7
1944 Female, age 72, unknown 109.7
2007 Male, age 72, unknown 88.7
1817 Female, age 42, unknown 86.8
1815 Male, age 53, unknown 68.1
2667 Female, age 75, unknown 63.3
2224 Female, age 72, unknown 44.6
2407 Male, age 75, both hemispheres 34.9
2273 Male, age 74, both hemispheres 29.3
2825 Male, age 18, unknown 25.6
2316 Male, age 76, right hemisphere 10.0
Red nucleus
nTPM: 28.0
2785 Male, age 18, unknown 52.2
2725 Female, age 75, unknown 51.8
1821 Female, age 72, unknown 49.7
2503 Female, age 72, unknown 29.0
1865 Male, age 51, unknown 25.0
2584 Male, age 75, left hemisphere 24.8
2823 Male, age 76, right hemisphere 24.8
1954 Female, age 42, unknown 22.3
2588 Male, age 74, left hemisphere 19.3
1904 Male, age 53, unknown 18.9
2227 Male, age 72, unknown 9.1
2769 Male, age 72, unknown 9.1
Substantia nigra
nTPM: 60.1
1941 Male, age 53, unknown 106.7
1916 Female, age 42, unknown 97.6
1889 Female, age 72, unknown 80.0
2241 Male, age 72, unknown 63.5
1851 Male, age 51, unknown 62.9
2409 Female, age 72, unknown 58.6
2583 Male, age 75, right hemisphere 49.5
2590 Female, age 75, unknown 32.7
2699 Male, age 18, unknown 25.1
2665 Male, age 74, both hemispheres 23.9
Superior colliculus
nTPM: 43.5
1895 Male, age 76, right hemisphere 71.9
2087 Female, age 72, unknown 69.6
1796 Male, age 53, unknown 60.7
2261 Male, age 18, unknown 58.6
2668 Female, age 75, unknown 46.1
1913 Female, age 42, unknown 29.9
1839 Male, age 51, unknown 29.5
2664 Male, age 75, both hemispheres 25.2
2587 Male, age 74, left hemisphere 24.6
1995 Male, age 72, unknown 18.9
Ventral tegmental area
nTPM: 38.7
2410 Female, age 72, unknown 67.9
1915 Female, age 42, unknown 57.0
2218 Male, age 76, both hemispheres 51.9
1942 Male, age 51, unknown 20.9
2223 Female, age 72, unknown 19.9
2021 Male, age 53, unknown 14.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.8
Samples: 139

Max nTPM: 221.6
Min nTPM: 38.4
Std nTPM: 25.2
Median nTPM: 72.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 221.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 187.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 147.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 140.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 136.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 121.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 109.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 109.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 109.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 108.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 106.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 193.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 193.9
FF:10158-103A5 76 years, female 193.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 173.7
Pig sample Sample description nTPM
Midbrain
nTPM: 173.7
Samples: 4

Max nTPM: 211.7
Min nTPM: 124.6
Sample A Female 202.7
Sample B Female 124.6
Sample C Male 211.7
Sample D Male 155.8
Periaqueductal gray
nTPM: 126.1
Samples: 3

Max nTPM: 135.0
Min nTPM: 118.0
Sample B Female 125.2
Sample C Male 135.0
Sample D Male 118.0
Substantia nigra
nTPM: 143.4
Samples: 4

Max nTPM: 165.1
Min nTPM: 106.1
Sample A Female 165.1
Sample B Female 106.1
Sample C Male 159.3
Sample D Male 143.2
Superior colliculi
nTPM: 154.3
Samples: 4

Max nTPM: 214.9
Min nTPM: 95.3
Sample A Female 142.2
Sample B Female 95.3
Sample C Male 214.9
Sample D Male 164.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.1
Samples: 4

Max nTPM: 142.0
Min nTPM: 101.0
Sample A Male 101.0
Sample B Male 137.9
Sample C Female 131.4
Sample D Female 142.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.7
68844707 Antisense, RP_050222_02_C04, Mouse strain C57BL/6J (56 days, male) 18.8
71924087 Antisense, RP_051017_02_H10, Mouse strain C57BL/6J (56 days, male) 14.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.