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LIX1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.4 nTPM
HPA:32.4 nTPM
GTEx:17.5 nTPM
FANTOM5:12.2 Scaled Tags Per Million
Pig:3.0 nTPM
Mouse:30.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.0
2586 Male, age 75, left hemisphere 26.0
2828 Female, age 72, unknown 23.4
1827 Male, age 72, unknown 19.7
1870 Female, age 42, unknown 18.8
1833 Male, age 53, unknown 17.8
2666 Male, age 74, left hemisphere 17.3
1830 Male, age 51, unknown 17.1
2411 Female, age 72, unknown 16.6
2219 Male, age 76, both hemispheres 14.1
2019 Male, age 18, unknown 9.8
Dorsal raphe nucleus
nTPM: 22.4
2016 Female, age 72, unknown 29.9
2298 Female, age 72, unknown 25.0
1828 Male, age 53, unknown 22.4
2047 Male, age 72, unknown 20.5
2750 Male, age 76, both hemispheres 14.2
Inferior colliculus
nTPM: 24.4
1848 Female, age 42, unknown 29.8
2849 Male, age 72, unknown 25.6
2097 Female, age 72, unknown 22.9
1890 Male, age 53, unknown 19.3
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Pedunculopontine tegmental nucleus
nTPM: 17.4
2334 Male, age 80, both hemispheres 18.6
1921 Female, age 85, both hemispheres 18.5
2338 Male, age 61, both hemispheres 15.1
Periaquaductal grey, anterior
nTPM: 23.2
2502 Female, age 75, unknown 25.9
1947 Male, age 18, unknown 21.9
1795 Male, age 51, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 32.4
1840 Male, age 53, unknown 43.0
2850 Male, age 76, both hemispheres 31.3
1831 Male, age 72, unknown 27.8
2464 Female, age 72, unknown 27.6
Periaquaductal grey, lateral
nTPM: 29.0
2053 Male, age 18, unknown 37.3
2140 Male, age 76, both hemispheres 28.8
2272 Male, age 74, both hemispheres 21.0
Pretectal area
nTPM: 21.3
2273 Male, age 74, both hemispheres 30.7
2407 Male, age 75, both hemispheres 28.2
2825 Male, age 18, unknown 27.1
2224 Female, age 72, unknown 25.8
2316 Male, age 76, right hemisphere 20.8
2667 Female, age 75, unknown 20.7
1815 Male, age 53, unknown 19.4
1944 Female, age 72, unknown 18.4
1816 Male, age 51, unknown 16.0
1817 Female, age 42, unknown 15.9
2007 Male, age 72, unknown 11.4
Red nucleus
nTPM: 15.7
1954 Female, age 42, unknown 19.4
2503 Female, age 72, unknown 18.5
2227 Male, age 72, unknown 17.7
1865 Male, age 51, unknown 17.4
1904 Male, age 53, unknown 17.4
2769 Male, age 72, unknown 17.3
1821 Female, age 72, unknown 17.2
2588 Male, age 74, left hemisphere 15.3
2725 Female, age 75, unknown 13.9
2823 Male, age 76, right hemisphere 13.5
2785 Male, age 18, unknown 10.6
2584 Male, age 75, left hemisphere 10.5
Substantia nigra
nTPM: 20.0
2699 Male, age 18, unknown 37.4
1916 Female, age 42, unknown 24.8
2241 Male, age 72, unknown 20.5
1851 Male, age 51, unknown 20.4
2590 Female, age 75, unknown 18.7
1889 Female, age 72, unknown 17.4
2583 Male, age 75, right hemisphere 17.4
2665 Male, age 74, both hemispheres 16.5
2409 Female, age 72, unknown 14.9
1941 Male, age 53, unknown 11.9
Superior colliculus
nTPM: 24.2
2664 Male, age 75, both hemispheres 34.8
1995 Male, age 72, unknown 31.3
2587 Male, age 74, left hemisphere 25.9
1796 Male, age 53, unknown 25.1
2668 Female, age 75, unknown 23.6
1839 Male, age 51, unknown 23.1
1913 Female, age 42, unknown 21.6
2261 Male, age 18, unknown 19.7
2087 Female, age 72, unknown 18.7
1895 Male, age 76, right hemisphere 18.2
Ventral tegmental area
nTPM: 18.9
2021 Male, age 53, unknown 23.4
1942 Male, age 51, unknown 21.8
1915 Female, age 42, unknown 20.6
2410 Female, age 72, unknown 19.2
2218 Male, age 76, both hemispheres 14.2
2223 Female, age 72, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.5
Samples: 139

Max nTPM: 52.7
Min nTPM: 0.8
Std nTPM: 9.9
Median nTPM: 15.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 49.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 47.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 39.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 39.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 39.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 38.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 35.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 34.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.2
FF:10158-103A5 76 years, female 12.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.0
Pig sample Sample description nTPM
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.4
Sample A Female 1.8
Sample B Female 1.9
Sample C Male 1.8
Sample D Male 0.4
Periaqueductal gray
nTPM: 0.9
Samples: 3

Max nTPM: 1.0
Min nTPM: 0.8
Sample B Female 1.0
Sample C Male 0.9
Sample D Male 0.8
Substantia nigra
nTPM: 3.0
Samples: 4

Max nTPM: 4.9
Min nTPM: 1.2
Sample A Female 2.4
Sample B Female 4.9
Sample C Male 3.5
Sample D Male 1.2
Superior colliculi
nTPM: 1.8
Samples: 4

Max nTPM: 4.7
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 0.7
Sample C Male 1.2
Sample D Male 4.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 32.6
Min nTPM: 29.7
Sample A Male 29.7
Sample B Male 31.5
Sample C Female 32.6
Sample D Female 30.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
644 Antisense, RP_Baylor_103249, Mouse strain C57BL/6J (56 days, male) 0.3
643 Antisense, RP_Baylor_103249, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.