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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA:10.6 nTPM
GTEx:7.4 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:40.1 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.9
1857 Female, age 85, left hemisphere 11.1
1781 Male, age 74, unknown 10.6
2846 Female, age 79, unknown 8.7
2288 Male, age 75, left hemisphere 7.4
1854 Male, age 80, left hemisphere 5.9
2290 Female, age 72, unknown 5.5
2289 Male, age 61, right hemisphere 3.6
2481 Female, age 94, left hemisphere 1.9
Claustrum
nTPM: 10.6
1956 Male, age 74, unknown 12.8
2392 Female, age 94, both hemispheres 12.7
2198 Male, age 80, both hemispheres 11.7
2196 Female, age 79, unknown 10.9
2292 Female, age 85, both hemispheres 10.5
2284 Female, age 91, both hemispheres 10.4
2491 Male, age 75, both hemispheres 10.2
2568 Male, age 61, both hemispheres 9.6
2645 Female, age 72, unknown 6.4
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.1
2287 Male, age 75, right hemisphere 0.9
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 6.7
2391 Female, age 94, left hemisphere 12.4
1856 Female, age 91, right hemisphere 9.5
1783 Male, age 74, unknown 9.2
1806 Female, age 85, left hemisphere 6.4
2824 Male, age 61, right hemisphere 6.3
2286 Male, age 75, left hemisphere 5.0
2698 Female, age 72, unknown 4.9
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 1.8
2393 Male, age 80, right hemisphere 3.3
2821 Male, age 75, both hemispheres 2.3
2484 Female, age 94, left hemisphere 1.8
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 7.7
2195 Female, age 85, both hemispheres 10.2
2029 Male, age 61, right hemisphere 8.8
1812 Female, age 91, both hemispheres 8.5
2775 Male, age 80, right hemisphere 8.4
1979 Male, age 74, unknown 2.5
Olfactory tubercle
nTPM: 9.4
1998 Female, age 91, both hemispheres 11.4
2856 Male, age 75, right hemisphere 9.4
2487 Female, age 94, left hemisphere 9.0
1846 Male, age 80, right hemisphere 8.0
Putamen
nTPM: 5.1
2466 Female, age 79, unknown 8.9
1829 Male, age 74, unknown 8.3
1838 Male, age 80, right hemisphere 7.8
1937 Female, age 91, right hemisphere 7.7
2482 Female, age 94, left hemisphere 2.5
2647 Male, age 75, left hemisphere 0.7
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 6.0
2031 Female, age 72, unknown 14.9
2629 Female, age 94, right hemisphere 11.2
1960 Male, age 74, unknown 8.3
2009 Female, age 91, both hemispheres 6.7
2059 Female, age 85, both hemispheres 1.2
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.4
Samples: 246

Max nTPM: 30.0
Min nTPM: 1.3
Std nTPM: 4.0
Median nTPM: 6.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 30.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 22.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 20.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 17.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 16.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 16.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 15.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 15.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 15.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 14.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 14.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.2
Samples: 246

Max nTPM: 18.8
Min nTPM: 0.8
Std nTPM: 3.2
Median nTPM: 7.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 18.8
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 16.6
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 14.4
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 14.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 13.9
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 13.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 13.5
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 13.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 13.2
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 13.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 12.8
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Brain - Putamen (basal ganglia)
Average nTPM: 6.3
Samples: 205

Max nTPM: 19.3
Min nTPM: 1.3
Std nTPM: 3.3
Median nTPM: 5.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 19.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 18.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 16.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 16.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 15.4
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 14.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 13.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 13.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 13.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 13.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 12.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.4
FF:10164-103B2 76 years, female 62.4
Globus pallidus
Scaled Tags Per Million: 42.1
FF:10175-103C4 60 years, female 56.8
FF:10161-103A8 76 years, female 27.4
Nucleus accumbens
Scaled Tags Per Million: 69.6
FF:10037-101F1 23-56 years, mixed 69.6
Putamen
Scaled Tags Per Million: 66.0
FF:10176-103C5 60 years, female 66.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.8
Pig sample Sample description nTPM
Caudate
nTPM: 23.2
Samples: 4

Max nTPM: 24.6
Min nTPM: 21.6
Sample A Female 23.2
Sample B Female 21.6
Sample C Male 23.4
Sample D Male 24.6
Putamen
nTPM: 24.8
Samples: 4

Max nTPM: 34.1
Min nTPM: 14.8
Sample A Female 14.8
Sample B Female 23.4
Sample C Male 34.1
Sample D Male 27.0
Septum
nTPM: 23.5
Samples: 4

Max nTPM: 28.4
Min nTPM: 20.0
Sample A Female 24.5
Sample B Female 20.0
Sample C Male 21.2
Sample D Male 28.4
Ventral pallidum
nTPM: 22.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 16.9
Sample A Female 26.3
Sample B Female 16.9
Sample C Male 21.6
Sample D Male 23.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.6
Samples: 4

Max nTPM: 40.1
Min nTPM: 34.3
Sample A Male 40.1
Sample B Male 39.9
Sample C Female 34.3
Sample D Female 36.1
Septum
nTPM: 40.1
Samples: 4

Max nTPM: 45.9
Min nTPM: 32.9
Sample A Male 32.9
Sample B Male 45.9
Sample C Female 39.6
Sample D Female 42.0
Ventral forebrain
nTPM: 26.4
Samples: 4

Max nTPM: 27.8
Min nTPM: 25.8
Sample A Male 25.9
Sample B Male 27.8
Sample C Female 25.8
Sample D Female 26.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69736292 Antisense, RP_050503_04_E03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69736292 Antisense, RP_050503_04_E03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.