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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.0 nTPM
HPA:69.0 nTPM
GTEx:58.5 nTPM
FANTOM5:52.5 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:106.2 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.6
1827 Male, age 72, unknown 65.4
2666 Male, age 74, left hemisphere 64.7
1833 Male, age 53, unknown 62.0
2828 Female, age 72, unknown 62.0
1870 Female, age 42, unknown 61.7
2219 Male, age 76, both hemispheres 61.2
2411 Female, age 72, unknown 61.1
1830 Male, age 51, unknown 60.3
2019 Male, age 18, unknown 59.0
2586 Male, age 75, left hemisphere 58.5
Dorsal raphe nucleus
nTPM: 62.0
2298 Female, age 72, unknown 64.5
2750 Male, age 76, both hemispheres 62.5
1828 Male, age 53, unknown 62.4
2047 Male, age 72, unknown 62.1
2016 Female, age 72, unknown 58.5
Inferior colliculus
nTPM: 62.2
2849 Male, age 72, unknown 64.6
2097 Female, age 72, unknown 62.6
1890 Male, age 53, unknown 61.1
1848 Female, age 42, unknown 60.7
Median raphe nucleus
nTPM: 69.0
2220 Male, age 76, midline 69.0
Pedunculopontine tegmental nucleus
nTPM: 63.7
2334 Male, age 80, both hemispheres 65.2
2338 Male, age 61, both hemispheres 65.0
1921 Female, age 85, both hemispheres 60.8
Periaquaductal grey, anterior
nTPM: 61.2
1947 Male, age 18, unknown 63.0
1795 Male, age 51, unknown 60.5
2502 Female, age 75, unknown 60.2
Periaquaductal grey, dorsal
nTPM: 61.6
2850 Male, age 76, both hemispheres 64.6
2464 Female, age 72, unknown 61.7
1840 Male, age 53, unknown 61.4
1831 Male, age 72, unknown 58.7
Periaquaductal grey, lateral
nTPM: 59.7
2272 Male, age 74, both hemispheres 60.7
2140 Male, age 76, both hemispheres 59.8
2053 Male, age 18, unknown 58.6
Pretectal area
nTPM: 62.7
1816 Male, age 51, unknown 66.8
1817 Female, age 42, unknown 66.3
2825 Male, age 18, unknown 63.6
1815 Male, age 53, unknown 63.3
2007 Male, age 72, unknown 62.7
2667 Female, age 75, unknown 62.6
2224 Female, age 72, unknown 62.2
1944 Female, age 72, unknown 61.7
2273 Male, age 74, both hemispheres 61.2
2316 Male, age 76, right hemisphere 60.1
2407 Male, age 75, both hemispheres 59.0
Red nucleus
nTPM: 60.5
2725 Female, age 75, unknown 64.3
2588 Male, age 74, left hemisphere 63.7
1821 Female, age 72, unknown 63.6
2503 Female, age 72, unknown 60.4
2227 Male, age 72, unknown 60.1
1954 Female, age 42, unknown 59.9
2584 Male, age 75, left hemisphere 59.4
1865 Male, age 51, unknown 59.3
2785 Male, age 18, unknown 59.3
2823 Male, age 76, right hemisphere 59.2
2769 Male, age 72, unknown 58.6
1904 Male, age 53, unknown 58.0
Substantia nigra
nTPM: 63.4
1916 Female, age 42, unknown 66.6
2241 Male, age 72, unknown 66.5
1941 Male, age 53, unknown 65.4
2699 Male, age 18, unknown 64.5
1851 Male, age 51, unknown 63.4
1889 Female, age 72, unknown 62.6
2665 Male, age 74, both hemispheres 62.6
2590 Female, age 75, unknown 61.6
2409 Female, age 72, unknown 61.3
2583 Male, age 75, right hemisphere 59.0
Superior colliculus
nTPM: 60.8
1796 Male, age 53, unknown 62.9
2587 Male, age 74, left hemisphere 62.5
1839 Male, age 51, unknown 61.9
2261 Male, age 18, unknown 61.9
1895 Male, age 76, right hemisphere 61.2
2087 Female, age 72, unknown 60.6
1913 Female, age 42, unknown 59.8
2664 Male, age 75, both hemispheres 59.8
2668 Female, age 75, unknown 59.6
1995 Male, age 72, unknown 57.5
Ventral tegmental area
nTPM: 63.1
2223 Female, age 72, unknown 66.5
1915 Female, age 42, unknown 64.5
2218 Male, age 76, both hemispheres 63.2
2410 Female, age 72, unknown 62.2
2021 Male, age 53, unknown 61.2
1942 Male, age 51, unknown 60.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.5
Samples: 139

Max nTPM: 98.0
Min nTPM: 40.3
Std nTPM: 9.9
Median nTPM: 56.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 98.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 91.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 87.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 83.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 78.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 75.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 74.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 73.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 72.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 72.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.5
FF:10158-103A5 76 years, female 52.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.7
Pig sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 7.3
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 7.1
Sample C Male 7.0
Sample D Male 7.3
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 7.2
Min nTPM: 6.3
Sample B Female 6.7
Sample C Male 6.3
Sample D Male 7.2
Substantia nigra
nTPM: 5.5
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 6.5
Sample C Male 6.9
Sample D Male 5.0
Superior colliculi
nTPM: 5.3
Samples: 4

Max nTPM: 7.1
Min nTPM: 3.6
Sample A Female 3.8
Sample B Female 3.6
Sample C Male 6.7
Sample D Male 7.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 106.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 110.0
Min nTPM: 101.4
Sample A Male 105.0
Sample B Male 110.0
Sample C Female 108.6
Sample D Female 101.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69080733 Antisense, RP_050324_02_D02, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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