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TRIM41
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:57.8 nTPM
HPA:57.8 nTPM
GTEx:40.6 nTPM
FANTOM5:49.3 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:27.8 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA024204
Glial cells Low
Neuronal cells Medium

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.9
2846 Female, age 79, unknown 41.5
1781 Male, age 74, unknown 39.0
2290 Female, age 72, unknown 38.2
2288 Male, age 75, left hemisphere 37.5
1857 Female, age 85, left hemisphere 37.1
2289 Male, age 61, right hemisphere 36.7
1854 Male, age 80, left hemisphere 36.6
2481 Female, age 94, left hemisphere 36.2
Claustrum
nTPM: 43.6
2292 Female, age 85, both hemispheres 48.2
2491 Male, age 75, both hemispheres 46.2
2568 Male, age 61, both hemispheres 43.9
2392 Female, age 94, both hemispheres 43.4
2645 Female, age 72, unknown 43.2
1956 Male, age 74, unknown 43.0
2196 Female, age 79, unknown 42.3
2284 Female, age 91, both hemispheres 41.6
2198 Male, age 80, both hemispheres 40.3
Globus pallidus, externus
nTPM: 57.8
2567 Female, age 72, unknown 71.7
2646 Male, age 61, right hemisphere 64.6
1996 Male, age 80, right hemisphere 53.1
2395 Male, age 75, both hemispheres 49.8
2772 Female, age 79, unknown 49.6
Globus pallidus, internus
nTPM: 52.7
2483 Female, age 94, right hemisphere 64.3
2566 Female, age 72, unknown 60.6
2287 Male, age 75, right hemisphere 52.9
2111 Female, age 85, right hemisphere 51.1
2778 Female, age 91, both hemispheres 49.6
1818 Male, age 74, unknown 45.1
2037 Male, age 80, right hemisphere 45.1
Nucleus accumbens
nTPM: 38.9
2698 Female, age 72, unknown 43.1
2732 Male, age 80, right hemisphere 42.2
2391 Female, age 94, left hemisphere 39.3
1806 Female, age 85, left hemisphere 38.4
1783 Male, age 74, unknown 38.1
1856 Female, age 91, right hemisphere 36.9
2824 Male, age 61, right hemisphere 36.8
2286 Male, age 75, left hemisphere 36.4
Nucleus basalis of Meynert
nTPM: 47.6
2569 Male, age 61, both hemispheres 67.5
2484 Female, age 94, left hemisphere 43.0
2821 Male, age 75, both hemispheres 41.4
2393 Male, age 80, right hemisphere 38.6
Nucleus of the diagonal band
nTPM: 37.1
1812 Female, age 91, both hemispheres 40.3
1979 Male, age 74, unknown 37.5
2775 Male, age 80, right hemisphere 36.4
2029 Male, age 61, right hemisphere 35.7
2195 Female, age 85, both hemispheres 35.5
Olfactory tubercle
nTPM: 35.9
1998 Female, age 91, both hemispheres 37.5
2856 Male, age 75, right hemisphere 35.9
1846 Male, age 80, right hemisphere 35.1
2487 Female, age 94, left hemisphere 35.0
Putamen
nTPM: 40.9
2647 Male, age 75, left hemisphere 47.9
1829 Male, age 74, unknown 44.2
2489 Female, age 72, unknown 42.8
2466 Female, age 79, unknown 40.6
1937 Female, age 91, right hemisphere 39.2
2482 Female, age 94, left hemisphere 36.6
1838 Male, age 80, right hemisphere 35.2
Septal nuclei
nTPM: 37.7
2394 Male, age 61, left hemisphere 41.8
2199 Male, age 80, right hemisphere 38.1
1960 Male, age 74, unknown 37.7
2059 Female, age 85, both hemispheres 37.2
2031 Female, age 72, unknown 37.1
2009 Female, age 91, both hemispheres 36.3
2629 Female, age 94, right hemisphere 35.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.1
Samples: 246

Max nTPM: 100.9
Min nTPM: 9.3
Std nTPM: 11.9
Median nTPM: 21.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 100.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 73.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 73.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 68.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 66.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 56.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 56.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 55.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 54.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 52.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 50.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.2
Samples: 246

Max nTPM: 134.6
Min nTPM: 8.4
Std nTPM: 14.7
Median nTPM: 19.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 134.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 94.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 78.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 71.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 70.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 69.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 69.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 63.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 62.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 60.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 59.1
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Brain - Putamen (basal ganglia)
Average nTPM: 40.6
Samples: 205

Max nTPM: 167.1
Min nTPM: 11.6
Std nTPM: 22.9
Median nTPM: 34.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 167.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 137.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 125.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 121.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 103.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 99.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 96.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 87.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 84.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 83.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 82.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.0
FF:10164-103B2 76 years, female 32.0
Globus pallidus
Scaled Tags Per Million: 49.3
FF:10161-103A8 76 years, female 68.6
FF:10175-103C4 60 years, female 29.9
Nucleus accumbens
Scaled Tags Per Million: 32.2
FF:10037-101F1 23-56 years, mixed 32.2
Putamen
Scaled Tags Per Million: 38.6
FF:10176-103C5 60 years, female 38.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Caudate
nTPM: 13.2
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 14.0
Sample C Male 15.4
Sample D Male 12.6
Putamen
nTPM: 15.8
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.2
Sample A Female 15.2
Sample B Female 13.2
Sample C Male 18.0
Sample D Male 16.8
Septum
nTPM: 14.2
Samples: 4

Max nTPM: 15.2
Min nTPM: 13.2
Sample A Female 15.2
Sample B Female 13.2
Sample C Male 15.1
Sample D Male 13.4
Ventral pallidum
nTPM: 14.5
Samples: 4

Max nTPM: 17.5
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 13.8
Sample C Male 17.5
Sample D Male 14.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 25.8
Samples: 4

Max nTPM: 28.8
Min nTPM: 23.2
Sample A Male 23.2
Sample B Male 28.8
Sample C Female 23.2
Sample D Female 27.8
Septum
nTPM: 23.3
Samples: 4

Max nTPM: 28.3
Min nTPM: 19.7
Sample A Male 28.3
Sample B Male 22.3
Sample C Female 22.7
Sample D Female 19.7
Ventral forebrain
nTPM: 27.8
Samples: 4

Max nTPM: 31.7
Min nTPM: 24.5
Sample A Male 27.1
Sample B Male 27.9
Sample C Female 24.5
Sample D Female 31.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
587432 Antisense, RP_040831_01_G06, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.3
587432 Antisense, RP_040831_01_G06, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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