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TMEM47
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.7 nTPM
HPA:38.7 nTPM
GTEx:17.9 nTPM
FANTOM5:13.6 Scaled Tags Per Million
Pig:73.0 nTPM
Mouse:121.9 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
2586 Male, age 75, left hemisphere 36.0
2019 Male, age 18, unknown 30.5
2828 Female, age 72, unknown 28.4
1827 Male, age 72, unknown 27.4
2411 Female, age 72, unknown 25.9
1833 Male, age 53, unknown 25.3
1870 Female, age 42, unknown 25.0
1830 Male, age 51, unknown 24.5
2666 Male, age 74, left hemisphere 22.5
2219 Male, age 76, both hemispheres 18.9
Dorsal raphe nucleus
nTPM: 35.6
2298 Female, age 72, unknown 45.5
2016 Female, age 72, unknown 43.5
1828 Male, age 53, unknown 34.9
2047 Male, age 72, unknown 29.5
2750 Male, age 76, both hemispheres 24.5
Inferior colliculus
nTPM: 30.0
2097 Female, age 72, unknown 33.2
1848 Female, age 42, unknown 30.9
2849 Male, age 72, unknown 29.1
1890 Male, age 53, unknown 26.7
Median raphe nucleus
nTPM: 25.1
2220 Male, age 76, midline 25.1
Pedunculopontine tegmental nucleus
nTPM: 23.3
1921 Female, age 85, both hemispheres 28.3
2334 Male, age 80, both hemispheres 23.2
2338 Male, age 61, both hemispheres 18.4
Periaquaductal grey, anterior
nTPM: 29.2
1795 Male, age 51, unknown 31.0
2502 Female, age 75, unknown 28.8
1947 Male, age 18, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 38.7
1840 Male, age 53, unknown 45.5
2850 Male, age 76, both hemispheres 42.2
1831 Male, age 72, unknown 33.9
2464 Female, age 72, unknown 33.3
Periaquaductal grey, lateral
nTPM: 35.0
2272 Male, age 74, both hemispheres 38.6
2140 Male, age 76, both hemispheres 37.6
2053 Male, age 18, unknown 28.7
Pretectal area
nTPM: 32.5
2273 Male, age 74, both hemispheres 42.5
2224 Female, age 72, unknown 40.6
1817 Female, age 42, unknown 34.9
1944 Female, age 72, unknown 33.3
2007 Male, age 72, unknown 32.3
1816 Male, age 51, unknown 31.4
1815 Male, age 53, unknown 31.1
2667 Female, age 75, unknown 28.7
2407 Male, age 75, both hemispheres 28.2
2825 Male, age 18, unknown 28.0
2316 Male, age 76, right hemisphere 26.1
Red nucleus
nTPM: 26.1
2785 Male, age 18, unknown 32.1
2503 Female, age 72, unknown 29.2
2725 Female, age 75, unknown 28.5
1821 Female, age 72, unknown 27.3
1954 Female, age 42, unknown 26.7
1904 Male, age 53, unknown 25.8
2823 Male, age 76, right hemisphere 25.3
2227 Male, age 72, unknown 25.0
2769 Male, age 72, unknown 24.9
1865 Male, age 51, unknown 24.5
2584 Male, age 75, left hemisphere 21.7
2588 Male, age 74, left hemisphere 21.7
Substantia nigra
nTPM: 22.7
1889 Female, age 72, unknown 29.7
2583 Male, age 75, right hemisphere 27.2
2241 Male, age 72, unknown 23.6
2409 Female, age 72, unknown 22.9
1851 Male, age 51, unknown 22.4
2590 Female, age 75, unknown 22.1
2699 Male, age 18, unknown 21.3
2665 Male, age 74, both hemispheres 19.7
1916 Female, age 42, unknown 19.2
1941 Male, age 53, unknown 19.0
Superior colliculus
nTPM: 29.8
1995 Male, age 72, unknown 38.2
2664 Male, age 75, both hemispheres 35.3
2087 Female, age 72, unknown 30.5
2261 Male, age 18, unknown 30.5
2668 Female, age 75, unknown 30.4
1796 Male, age 53, unknown 28.0
1839 Male, age 51, unknown 28.0
2587 Male, age 74, left hemisphere 27.0
1913 Female, age 42, unknown 26.3
1895 Male, age 76, right hemisphere 23.6
Ventral tegmental area
nTPM: 27.4
2021 Male, age 53, unknown 34.4
1942 Male, age 51, unknown 30.7
2410 Female, age 72, unknown 25.8
1915 Female, age 42, unknown 25.1
2223 Female, age 72, unknown 24.4
2218 Male, age 76, both hemispheres 24.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 74.3
Min nTPM: 3.0
Std nTPM: 10.4
Median nTPM: 16.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 74.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 65.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 53.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 43.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 39.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 37.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 36.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 31.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 31.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 31.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.6
FF:10158-103A5 76 years, female 13.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.0
Pig sample Sample description nTPM
Midbrain
nTPM: 65.9
Samples: 4

Max nTPM: 72.5
Min nTPM: 58.3
Sample A Female 72.1
Sample B Female 72.5
Sample C Male 60.8
Sample D Male 58.3
Periaqueductal gray
nTPM: 73.0
Samples: 3

Max nTPM: 83.0
Min nTPM: 64.1
Sample B Female 71.9
Sample C Male 83.0
Sample D Male 64.1
Substantia nigra
nTPM: 53.1
Samples: 4

Max nTPM: 68.0
Min nTPM: 42.9
Sample A Female 68.0
Sample B Female 49.4
Sample C Male 51.9
Sample D Male 42.9
Superior colliculi
nTPM: 49.2
Samples: 4

Max nTPM: 64.3
Min nTPM: 29.3
Sample A Female 64.3
Sample B Female 29.3
Sample C Male 51.7
Sample D Male 51.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.9
Samples: 4

Max nTPM: 129.5
Min nTPM: 117.2
Sample A Male 119.8
Sample B Male 121.0
Sample C Female 129.5
Sample D Female 117.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
75081394 Antisense, RP_051206_02_E12, Mouse strain C57BL/6J (56 days, male) 1.4
73712876 Antisense, RP_051206_02_E12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.