ABOUTMENU
HELP
NEWS
TACC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA:34.9 nTPM
GTEx:34.5 nTPM
FANTOM5:132.7 Scaled Tags Per Million
Pig:39.5 nTPM
Mouse:22.1 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
2019 Male, age 18, unknown 39.6
2666 Male, age 74, left hemisphere 39.6
2586 Male, age 75, left hemisphere 34.1
1830 Male, age 51, unknown 27.7
2411 Female, age 72, unknown 27.0
2828 Female, age 72, unknown 25.7
1833 Male, age 53, unknown 25.1
1870 Female, age 42, unknown 22.0
1827 Male, age 72, unknown 21.5
2219 Male, age 76, both hemispheres 2.7
Dorsal raphe nucleus
nTPM: 16.6
2750 Male, age 76, both hemispheres 25.7
1828 Male, age 53, unknown 19.5
2016 Female, age 72, unknown 16.2
2047 Male, age 72, unknown 14.2
2298 Female, age 72, unknown 7.4
Inferior colliculus
nTPM: 22.0
1848 Female, age 42, unknown 26.8
2849 Male, age 72, unknown 24.3
1890 Male, age 53, unknown 22.3
2097 Female, age 72, unknown 14.7
Median raphe nucleus
nTPM: 9.9
2220 Male, age 76, midline 9.9
Pedunculopontine tegmental nucleus
nTPM: 16.6
2334 Male, age 80, both hemispheres 20.3
2338 Male, age 61, both hemispheres 20.3
1921 Female, age 85, both hemispheres 9.1
Periaquaductal grey, anterior
nTPM: 14.2
2502 Female, age 75, unknown 20.0
1795 Male, age 51, unknown 11.3
1947 Male, age 18, unknown 11.1
Periaquaductal grey, dorsal
nTPM: 14.1
2464 Female, age 72, unknown 21.9
1831 Male, age 72, unknown 15.4
1840 Male, age 53, unknown 11.8
2850 Male, age 76, both hemispheres 7.2
Periaquaductal grey, lateral
nTPM: 12.5
2140 Male, age 76, both hemispheres 13.4
2272 Male, age 74, both hemispheres 12.3
2053 Male, age 18, unknown 11.8
Pretectal area
nTPM: 22.0
1817 Female, age 42, unknown 37.0
2007 Male, age 72, unknown 32.0
1815 Male, age 53, unknown 30.2
1944 Female, age 72, unknown 27.1
1816 Male, age 51, unknown 26.0
2407 Male, age 75, both hemispheres 24.2
2316 Male, age 76, right hemisphere 18.4
2667 Female, age 75, unknown 16.8
2825 Male, age 18, unknown 16.8
2224 Female, age 72, unknown 7.8
2273 Male, age 74, both hemispheres 6.0
Red nucleus
nTPM: 34.9
2588 Male, age 74, left hemisphere 50.7
2785 Male, age 18, unknown 38.4
1821 Female, age 72, unknown 36.5
2503 Female, age 72, unknown 36.2
2823 Male, age 76, right hemisphere 35.2
1865 Male, age 51, unknown 35.0
1904 Male, age 53, unknown 33.8
2769 Male, age 72, unknown 33.6
2227 Male, age 72, unknown 32.7
1954 Female, age 42, unknown 32.1
2584 Male, age 75, left hemisphere 29.1
2725 Female, age 75, unknown 25.2
Substantia nigra
nTPM: 27.5
2665 Male, age 74, both hemispheres 47.9
2583 Male, age 75, right hemisphere 31.9
2590 Female, age 75, unknown 28.7
1851 Male, age 51, unknown 28.4
2409 Female, age 72, unknown 26.4
1889 Female, age 72, unknown 26.0
2699 Male, age 18, unknown 25.7
1916 Female, age 42, unknown 21.0
1941 Male, age 53, unknown 20.2
2241 Male, age 72, unknown 18.7
Superior colliculus
nTPM: 25.2
2668 Female, age 75, unknown 30.6
2587 Male, age 74, left hemisphere 28.6
1995 Male, age 72, unknown 28.3
2087 Female, age 72, unknown 26.3
1913 Female, age 42, unknown 26.1
1839 Male, age 51, unknown 24.7
1796 Male, age 53, unknown 23.4
2664 Male, age 75, both hemispheres 21.8
1895 Male, age 76, right hemisphere 21.6
2261 Male, age 18, unknown 20.3
Ventral tegmental area
nTPM: 19.3
2410 Female, age 72, unknown 25.9
2223 Female, age 72, unknown 22.9
2021 Male, age 53, unknown 18.6
1915 Female, age 42, unknown 18.1
2218 Male, age 76, both hemispheres 15.5
1942 Male, age 51, unknown 15.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.5
Samples: 139

Max nTPM: 80.4
Min nTPM: 4.7
Std nTPM: 11.5
Median nTPM: 32.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 80.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 69.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 67.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 62.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 60.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 59.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 54.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 51.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 50.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 49.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 49.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.7
FF:10158-103A5 76 years, female 132.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.5
Pig sample Sample description nTPM
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 43.4
Min nTPM: 29.1
Sample A Female 43.2
Sample B Female 38.6
Sample C Male 43.4
Sample D Male 29.1
Periaqueductal gray
nTPM: 33.3
Samples: 3

Max nTPM: 36.0
Min nTPM: 29.9
Sample B Female 36.0
Sample C Male 34.0
Sample D Male 29.9
Substantia nigra
nTPM: 39.5
Samples: 4

Max nTPM: 44.6
Min nTPM: 36.0
Sample A Female 36.0
Sample B Female 38.0
Sample C Male 39.5
Sample D Male 44.6
Superior colliculi
nTPM: 36.6
Samples: 4

Max nTPM: 43.2
Min nTPM: 29.3
Sample A Female 34.7
Sample B Female 29.3
Sample C Male 43.2
Sample D Male 39.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 22.7
Min nTPM: 21.1
Sample A Male 21.7
Sample B Male 21.1
Sample C Female 22.7
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
74579951 Antisense, RP_060215_01_E04, Mouse strain C57BL/6J (56 days, male) 4.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.